<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29709

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMRGRVRNADIITALDVLQTGTYHGLPVGLRRAFKPEKPLSVTAVIAHLEQLNDVIRFRLRTKEIIPHSMKQIPYTIADGRVFFHVKNLFTCSVTLSGRSDDDIWFLLSVEFDIDSSVYTKKPKFGTRDEILAIANEELASKPPKTSALGDAPLVRLYNLLTNLSLNYKMEILHTQALNMARKTWKNKIDLTLSKDRRNLSIGYWLRPRQQPKPGQSPPPNQKTESGRLNISIATLSSEKQNPVESILNQIEIKSKLKATALADEIIEQCLQVDWTRNDKTEVEDAVLDLNNDNLSIERVVLQALVAHSVALLKRYKKSLCASSSWFNNATVQLQIPEVLGLGVSPTLHIQVFETQKLILSISPTTGRLIVRDPNESGTSAPARIKNLLDRMNEAGGISDNTPLLVEIVNRLRQSIAIEDIEQKCAYLQYKGTRRLKFAKGELNKLKLQARFWMFIHLPFANSSNNLFTMAIAIGESKVHVALIGMKEVNTELHVDYVGWLDTTKILAEETLTDHLLLDMNHIRILYAYSLARSNYIIIERQLKQRSVEFNFATTNTGSRLAGLIPHLTVHSNAFLRDHPSIANIFKPIAIVKVLDWWGASTSGCRIQAVFKPKGRSSILQKLKDKTSENVRYDYKSNVVEVTTTDNENTILEIIGQLTTFVKVTLIANQVSKDTRQFKLIESNLDNITLSYMDNYNVKLSWNSNKKMLYADFSGEGNPHKNVQEDMNRRLKSYVLDSGFFYRFTTLLLNTAKLIDTTKSLTKALILQRSSTHIRVKGMKEVVDIYLVNNRRVVIVDGTRALKNMIEPIIYSRLIHSEITSLDSTKKEILDKFAQQTKIIDSGVVLNNVDIGIKALPCFLLKLN
Length863
PositionTail
OrganismWallemia mellicola (strain ATCC MYA-4683 / CBS 633.66) (Wallemia sebi (CBS 633.66))
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Wallemiomycotina> Wallemiomycetes> Wallemiales> Wallemiaceae> Wallemia.
Aromaticity0.07
Grand average of hydropathy-0.197
Instability index40.69
Isoelectric point9.48
Molecular weight97687.78
Publications
PubMed=22326418

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29709
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.89|      21|     292|     468|     488|       1
---------------------------------------------------------------------------
  468-  488 (35.40/28.69)	TMAIAIGESKVHVALIGMKEV
  761-  781 (35.49/28.78)	TKALILQRSSTHIRVKGMKEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.92|      15|      17|     330|     346|       2
---------------------------------------------------------------------------
  332-  346 (26.99/21.97)	QLQIPEV..LGLGVSPT
  348-  364 (21.93/ 9.11)	HIQVFETqkLILSISPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.81|      10|      21|     434|     443|      15
---------------------------------------------------------------------------
  434-  443 (17.02/ 9.16)	RLKFAKGELN
  456-  465 (18.79/10.81)	HLPFANSSNN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29709 with Med14 domain of Kingdom Fungi
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