<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29679

Description Mediator complex subunit 23
SequenceMVQMETQLQSIFEEVVRQIIDFCSYRMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHEQCIQWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRYYIILKPLNVLANTWILLSLYLFFFYQGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNSWKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQVLYYHKQRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVLSLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKECIPVPDINKPQSTHAFAMTCIWIHLNRKAQNDNSTLQIPIPHSLKFHHEFLQQSLRNKSLQMNDYKIALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTSCLASASITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFKSHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLITALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKDILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMTNENDIITHFSIQGSPPLFLCLLWKMLLDTDHINQIGYRVLERIGARALVAHVRTFADFLVYEFSTSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPNDFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPIYFGNVCLRFLPVFDIVIHRFLELYPVSKSLETLLDHLGGLYKFHGELFQILILSNTYMSKMRSPIPVFLLASFILCRQNYCLSVFIHIKCFCNFTFVFFSSTCSQPLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSLRMSLYKDIMQISVSYFLVFHIKKVYIVDSIFSLPFVHQMKMCLNRSLHILIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSMKEQVEKIICNLKPALKLRLRFITHISKMEPAAVPPQAINSGSPAPQSNQVPASLPVTQ
Length1217
PositionTail
OrganismIctidomys tridecemlineatus (Thirteen-lined ground squirrel) (Spermophilus tridecemlineatus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Sciuromorpha> Sciuridae> Xerinae> Marmotini> Ictidomys.
Aromaticity0.11
Grand average of hydropathy0.109
Instability index46.10
Isoelectric point8.24
Molecular weight139714.85
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29679
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.14|      10|      30|     307|     316|       1
---------------------------------------------------------------------------
  307-  316 (18.69/10.13)	IFFVLFQFAS
  340-  349 (19.45/10.86)	LMWVLLQFIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     278.80|      92|     107|     931|    1035|       4
---------------------------------------------------------------------------
  918- 1027 (134.78/105.05)	PYLPiyFGNVclrFLPVFDIVIHRFLELYPVsksleTLLDHL........GGLYKfhgELFQIlilSNTY.....MSKMRSPIPVFLLaSFIlCRQNYCLSVFIHIKCFCNFTFVFFS.STCSQ
 1028- 1135 (144.02/81.25)	PLVP..RENI.taWMNAIGLIITALPEPYWI.....VLHDRIvsvisslrMSLYK...DIMQI...SVSYflvfhIKKVYIVDSIFSL.PFV.HQMKMCLNRSLHILIGVAFYDMLLNvDQCST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.45|      15|      17|     221|     237|       5
---------------------------------------------------------------------------
  207-  226 (23.67/13.69)	LDP..ATLRFPlkgllPYDKDL
  227-  246 (19.78/17.74)	FEPqtALLRYV..leqPYSRDM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.72|      21|     750|      84|     104|       6
---------------------------------------------------------------------------
   84-  104 (40.96/29.46)	CLAMAVETGLLPPR.YYII....LKP
  836-  861 (30.76/20.20)	CLAMRSHEGNEAQVcYFIIqlllLKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.67|      13|      20|     862|     874|      11
---------------------------------------------------------------------------
  862-  874 (22.12/14.11)	NDFRNRVSDFVKE
  883-  895 (26.55/18.51)	NDWHTKHMNYHKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29679 with Med23 domain of Kingdom Metazoa
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