<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29648

Description Uncharacterized protein
SequenceMKMVNLKQAILQAWKDRWSDYQWAINIKKNFPKGATWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLMAISKFDDFSRELCVKSLLEIMDMFCHRLSCHGKAEECIGLCRALLAVVVWLVQGCAWYCEKLRELGPSASTETSLGACQERLQSLMNSTKNRALVHIARLEDQGSWSNVEQAVLNLIDGLSSVSNSTLLTKLEESLSLVKSIPMMLSEQSDPPVHASFPSVHAFIMLEGTMNLTGEIQPLVEQLMMIKRMQRIPAPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQSDKGQDFMEDVNIAFQYLLKLTPLLDKADQRCNCDCLGMLLTECNKLGLLSDSNTLTLTSKREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICLSIPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLVTPLYGENTLQFYNERVIIMSSIMEHMCADVFQQTGATLRSPVEGQEPIPYRNLLPPKEPIHTALSKQFQAVLRKGWVDSRALHLFESLLNMGGVFWFTNNLVKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWRSLADPPGKALAKLSVWCALSSYSSHHKGSFSARQRKRQREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSKMAGPHTQFVQSFMEECVECLEQGSRGSILQFMPFTMVSELVKLPALAKPKVVLAITDLTLPLGRRVAAKAISAL
Length985
PositionTail
OrganismOreochromis niloticus (Nile tilapia) (Tilapia nilotica)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids> Pseudocrenilabrinae> Oreochromini> Oreochromis.
Aromaticity0.07
Grand average of hydropathy-0.012
Instability index46.97
Isoelectric point6.72
Molecular weight109948.82
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
enteric nervous system development	GO:0048484	IEA:Ensembl
interstitial cell of Cajal differentiation	GO:0061453	IEA:Ensembl
retinal cone cell development	GO:0046549	IEA:Ensembl
thymus development	GO:0048538	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29648
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.81|      42|     113|     289|     330|       1
---------------------------------------------------------------------------
  289-  330 (74.47/43.80)	GLI..ESPEGTEELKWTAFTFLKIPQVLLRLKKYPQSDKGQDFM
  403-  446 (65.35/37.61)	GLIlrAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.86|      29|      35|     141|     169|       3
---------------------------------------------------------------------------
  141-  169 (48.10/24.86)	KLRELGPSASTETSLGACQERLQSLMNST
  179-  207 (47.76/24.64)	RLEDQGSWSNVEQAVLNLIDGLSSVSNST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     331.86|     107|     170|     495|     608|       6
---------------------------------------------------------------------------
  495-  608 (165.39/121.87)	LC.HVVQTYGSevILSDPSpSGETPF.FETWLQTCMPEEGKTLNPDHPCFRpePGKVESLVTLLNNsSEMKLVQVKWHEICLsIPAAILEVLNAWENGVL....SVEAV..QKITDNIKGKV
  668-  782 (166.47/99.41)	MCaDVFQQTGA..TLRSPV.EGQEPIpYRNLLPPKEPIHTALSKQFQAVLR..KGWVDSRALHLFE.SLLNMGGVFWFTNNL.VKELLKETRQEWANRVVellySIFCLdtQQITLTLLGTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.98|      17|      20|     857|     875|       7
---------------------------------------------------------------------------
  857-  873 (28.67/17.65)	LSSNEDEPVALSSPGDR
  879-  895 (29.31/11.71)	LSASQLHTVNMRDPLNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29648 with Med24 domain of Kingdom Metazoa
Unable to open file!