<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29636

Description Uncharacterized protein
SequenceMTAATATPQVMRDRLLQAIDGQSNICNMVVVVEVISFLEKYPITKEALEETRLGKLINDVRKKTKNEDLAKRAKKLLRNWQKLIEPGKVEVLSKGGTGTSWSSIGGAHPCISAPAANPPSGKTGPELKNRNDFNNCSLRVEKLSNRKRKGEQKEGPILPAKIPKMTLNDKIQNSKQLQTNGIGAGAEIFADIRAHQSLDRDIPEALDNDKLNKIPVHAVKPHSNFPGCSKPPSTSSLLKASVLQQQARQEPAASGGKCRPRSPRCSLHSPQTLKQEAVVKQTAPQAQSIPGPSVRPGTVDNSGLGLPPQAFSASVQGFHTDGSGSADLDSHRLPPSMSLHGSTATPCSGVESLEDEGPSFNTGKRKRQKYRPKDYSVNLEGQTVEDRTKPVRLKDRRLTFDPVTGQIKTSFQKDSFPEGEVRPNNKPENNWSEQPKQNPPVPPSPFQQTDWKELSRSEIIQSYLSQQSNVLTSSGAHTPGAHFFMSEFLKKEEHQSKDAKKTHTLVSDSPPREIPGVSREVNGKDLSRLHTQHWSGVNGCYDTMGKWYDWTECISLDPHGDESRLNILPYVCLD
Length574
PositionUnknown
OrganismOreochromis niloticus (Nile tilapia) (Tilapia nilotica)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids> Pseudocrenilabrinae> Oreochromini> Oreochromis.
Aromaticity0.05
Grand average of hydropathy-0.790
Instability index49.08
Isoelectric point9.21
Molecular weight63186.48
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29636
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     119.01|      22|      23|     270|     291|       1
---------------------------------------------------------------------------
  203-  227 (28.23/15.33)	PEA..LDNDKLnkipVHAVKPHS...NFPG
  232-  255 (26.47/13.90)	PSTssLLKASV....LQQQARQE..PAASG
  270-  291 (36.36/21.94)	PQT..LKQEAV....VKQTAPQA..QSIPG
  296-  317 (27.95/15.10)	PGT..VDNSGL......GLPPQAfsASVQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.73|      29|      34|     442|     473|       3
---------------------------------------------------------------------------
  442-  473 (43.82/39.16)	PPSPFQQTdwkELSRSEIIQSYLSQQSNVLTS
  479-  507 (49.91/33.83)	PGAHFFMS...EFLKKEEHQSKDAKKTHTLVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29636 with Med26 domain of Kingdom Metazoa
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