<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29631

Description Transducin (beta)-like 1 X-linked receptor 1b
SequenceMSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYRDKLAQQQAAAGSGSSTGPQGSTKNGEGAANGEENGSHALANHHSEMMEVDRDVEIPQSKAMVLRGHESEVFICAWNPVNDLLASGSGDSTARIWNLSENSTGGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPVKTFQGHTNEVNAIKWDPTGSLLASCSDDMTLKIWSMKQDSCVHDLQAHSKEIYTIKWSPTGPGTNNPNASLMLASASFDSTVRLWDVERGVCIHTLTRHQEPVYSVAFSPDGRHLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNATGDKVGASASDGSVCVLDLRK
Length512
PositionTail
OrganismOreochromis niloticus (Nile tilapia) (Tilapia nilotica)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids> Pseudocrenilabrinae> Oreochromini> Oreochromis.
Aromaticity0.07
Grand average of hydropathy-0.326
Instability index36.29
Isoelectric point5.46
Molecular weight55435.04
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29631
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     349.30|      40|      40|     320|     359|       1
---------------------------------------------------------------------------
  215-  249 (41.58/18.16)	.EGGQDVP..S....NKDVTS.............LDWNSEG.........tlLATGSYD..GFARI
  251-  279 (37.68/15.88)	TKDGN..LASTLGQHKGPIFA.............LKWNKKG..........nF............I
  280-  331 (45.73/20.58)	LSAGVDKTTIIWDAHTGE..AkqqfpfhsapaldVDWQSNN..........tFASCSTD..MCIHV
  332-  373 (63.47/30.95)	CKLGQDRPVKTFQGHTNEVNA.............IKWDPTG.........slLASCSDD..MTLKI
  374-  424 (59.35/28.55)	WSMKQDSCVHDLQAHSKEIYT.............IKWSPTGpgtnnpnaslmLASASFD..STVRL
  425-  466 (61.25/29.66)	WDVERGVCIHTLTRHQEPVYS.............VAFSPDG.........rhLASGSFD..KCVHI
  467-  507 (40.24/17.37)	WNTQTGALVHSYRG.TGGIFE.............VCWNATG.........dkVGASASDgsVCV..
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29631 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KLAQQQAAAGSGSSTGPQGSTKNGEGAANGEENGSHALANHHSEMMEVDRDVEIPQSKA
102
160










Molecular Recognition Features






MoRF SequenceStartStop




1) FLVYRYL
10
16