<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29627

Description Uncharacterized protein
SequenceMVAGSALMEPSSKPGPNQVADVVFVIEGTANLGPYFESLRKNYILPAIEYFNGGPPAETDFGGDYGGTQYGLVVFNTVDCAPESYVQCHAPTSSAFEFVSWIDNIQFMGGGAESCSLIAEGLSVALQLFDDFKKMREQIGQTHKVCVLLCNSPPYLLPAVESVSYTGCTADSLVKIIRDRGIHFSVVAPRKLPPLRALFERASPVGGAVESLPDYSQDPFHMVLVRGISLPVSAGGGPGPHKPVIPPPVLASSQPVVGTPQPPPPINTTPPYQNTSLAAAQVAAQIVMEAANSQKNRFPGMSQGPPFPSHPVVKPIPPNLSTVSTVNTPIQPVTPNQQPVPPPGQPVPSQPPQPLPQQPQPSGNQTTQPSAPPTMPGSQVNPNPISQGQGVTNKVVAWTGVLEWQEKPKASSMDSATKLTRSLPCQVHVNPGENLNTDQWPQKLIMQLIPQQLLTTLGHLFRNSRMVQFLFTNKDVESLKGLYRIMANGFAGCVHFPHTTSPCEVRVLMLLYSSKKRIFMGLIPNDQSGFVNGIRQVITSHKQVQQHRALNSAAGPMQPNQVPPNQNFINRAPGPIPVSHGNVQQQSVVVGIPPVSQVSMMEEQQRQNNMMTMRAAGPTNQQPPVSGAPPNQVPTSGQAPPQGPILRLTNPGANPQLRSLLLSQQQPQGGVSHMPGMMSHQGLGQQMVHQAPGGGAQMQSQWRQPMAGQMMMSGAQRGAVPQPGMPQVSSMMEDEVLMDLI
Length741
PositionUnknown
OrganismOreochromis niloticus (Nile tilapia) (Tilapia nilotica)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids> Pseudocrenilabrinae> Oreochromini> Oreochromis.
Aromaticity0.05
Grand average of hydropathy-0.278
Instability index51.14
Isoelectric point8.49
Molecular weight79412.09
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29627
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     452.59|      74|      75|     564|     637|       1
---------------------------------------------------------------------------
  194-  243 (47.16/10.58)	....................P..LRAL...................FER..AS........PVG.GA....VE......SL.PD.YSQDP....F........HMVLVRGislpvsagGGPGPH.KP
  255-  339 (75.71/21.34)	PVVGTP.QPPPPINT...tpP..YQNTslaaaqvaaqivmeaansqKNR..FPGmsqgpPFP.SH..........PVVKPI.PPnLSTVS....TVNTP........IQP........VTP.NQ.QP
  341-  423 (86.74/25.49)	PPPGQPvPSQPPQPLpqqpqPsgNQTT...................QPS..APP.....TMPGSQVNpnpiSQGQGVTNKV....VAWTG....VLEWQEKPKAS.SMDS........ATKLTR.SL
  521-  558 (39.09/ 7.54)	.....................................................G.....LIP....N.....DQSGFVNGI.R....QVI....TSHKQVQQHRALN.SA........AGPM...Q.
  559-  623 (119.18/37.71)	.......PNQVP........P..NQNF...................INR..APG.....PIPVSHGN....VQQQSVVVGI.PP.VSQVS....MMEEQQRQNNMMTMRA........AGPTNQ.QP
  624-  700 (84.70/24.72)	PVSGAP.PNQVPTSG...qaP..PQGP...................ILRltNPG.....ANP..........QLRSLLLSQqQP.QGGVShmpgMMSHQGLGQQMVH.QA........PGGGAQmQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.35|      11|      21|     701|     711|       3
---------------------------------------------------------------------------
  701-  711 (23.52/11.77)	QWRQPMAGQMM
  722-  732 (21.83/10.35)	QPGMPQVSSMM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29627 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGGPGPHKPVIPPPVLASSQPVVGTPQPPPPINTTPPYQNTSLAAAQVAAQIVMEAANSQKNRFPGMSQGPPFPSHPVVKPIPPNLSTVSTVNTPIQPVTPNQQPVPPPGQPVPSQPPQPLPQQPQPSGNQTTQPSAPPTMPGSQVNPNPISQGQGVT
2) KQVQQHRALNSAAGPMQPNQVPPNQNFINRAPGPIPVSHGNVQQQS
3) VVGIPPVSQVSMMEEQQRQNNMMTMRAAGPTNQQPPVSGAPPNQVPTSGQAPPQGPILRLTNPGANPQLRSLLLSQQQPQGGVSHMPGMMSHQGLGQQMVHQAPGGGAQMQSQWRQPMAGQMMMSGAQRGAVPQPGMPQVSSMMEDEV
235
542
589
392
587
736










Molecular Recognition Features






MoRF SequenceStartStop




NANANA