<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29593
Description |
Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MENNIDEVQGNIQNPADDKHTVQTSNEKHENIELTEVKGINLALDPNLITLPIYKSSNTPGTNPNLTSSEIEPNNDLSNDNTTSNTTPTYMGESLINNPHEIFGQMPLTQLIPLILKQQGPGFRFADLSEESLRYEISKENMNNNLALHIEDKSKNINSIHEEINSELNNNTKIGLDTEITSDTDAMDIDFEDKNVISGNNKLEQNSSRFHPTGNDEDDISNTNVEEEDGSLLDGSNKDDTIELTQERFIKIRKEMLENINMALNETSLSLEFVSLLLSATRESVATSSMSPYLKKTVPTGSLNSDHILIEGKSQAELKHLETLDRGWKLQALDESSEILKKTHSKLKNILFKEHKYWNNLSKSIGNKDVIFKLRDRSTGERYLGIKYGYEDSGSTYRYDQGTARLKANPETNRLELMPIDRNENEISLDSKQNERFIRIRIYTKIEGEDDYILSGETAPGKIFVDNAEHGKENSRDIRDQIERLKAFIFEQELMYQLKRECSLLISYGVILEAESKIVIELPKEKFEIEYLKLTDDTVINHEQDAPRTNDKRALLMLITFRMLLTMIFKKTLRERLTSAKRSDKLVPERDILLIRPILGSMRHNNYKVLLRKILTDNIIDVIEGCVIREVAVNRKADDECIMDRHIMKLSNEIKSFNKLLNTWSSKFVINIPEKGTFDILLESPNYCNAVVSIKYSDLLSNISFDTKFNEFKEIEEFIIFIVSEYIENSENSIKKE |
Length | 737 |
Position | Head |
Organism | Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) (Yeast) (Kluyveromyces blattae) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Tetrapisispora.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.607 |
Instability index | 44.89 |
Isoelectric point | 5.02 |
Molecular weight | 84556.33 |
Publications | PubMed=22123960
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140
|
GO - Cellular Component | core mediator complex GO:0070847 IEA:EnsemblFungi
mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | activating transcription factor binding GO:0033613 IEA:EnsemblFungi
RNA polymerase II complex recruiting activity GO:0001139 IEA:EnsemblFungi
RNA polymerase II core promoter sequence-specific DNA binding GO:0000979 IEA:EnsemblFungi
transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | positive regulation of transcription by RNA polymerase II GO:0045944 IEA:EnsemblFungi
|
Interaction
Repeat regions
Repeats |
>MDP29593
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 377.43| 127| 142| 63| 204| 1
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63- 202 (195.29/133.85) NPNLTSSEIEPNNDLSN...........DNTTSNTTPTYMGESLINNPHEIFGQmpltqlIPLILKQQGPGFRFADLSEESLRYEISKENMNNNLALHIEDKSknINSIHEEINSE..........LNNNTKI.GLD..TEITSDTDAmdidfEDKNVISGNNK
206- 356 (182.14/96.60) NSSRFHPTGNDEDDISNtnveeedgsllDGSNKDDTIELTQERFIKIRKEMLEN......INMALNETSLSLEFVSLLLSATRESVATSSMSPYLKKTVPTGS..LNSDHILIEGKsqaelkhletLDRGWKLqALDesSEILKKTHS.....KLKNILFKEHK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 176.32| 62| 149| 462| 529| 2
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462- 529 (86.72/92.91) KIFVDNAEHGKENSRdIRD.QIERlKA...FIFEQELMyQLKREcslLISYGVILEA.ESKIVIELP.KEKFEI
613- 680 (89.60/68.76) KILTDNIIDVIEGCV.IREvAVNR.KAddeCIMDRHIM.KLSNE...IKSFNKLLNTwSSKFVINIPeKGTFDI
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