<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29579
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MNILSSSSVSWSKIGLIAYADNVSTEGNLSITFLETINGLNWRFHEPQKYCIHPHLHETQFHSSSNVFVGGSHGPNSVNSGNTIPASTGQTSTPSILGSLPVSNNASKSSSHHFFYSISSVYWNNWFNLPGDMLAVCDELGNMTMLILGQSPQGPVTIDKLTMLFQDNVYKLHNQLLPLQQVNEKSDKIERKETKKEYQTTILDFSWFSSSKPIISSQFCVLDSSTDLYKNKVQQIQPYGVFYPPSMKYGCLAVRKNGQVDFWYQFSNSKNHKKITTHLLNAQNKETNELDWLQFAKITPMNEDQCILITTFSRISKRLTFYKLHVNWNINPTNPTIINNPSLRVYHLLETTVDSINEEGNPIELTDLYILSRPSSEKEPPLEVLLIFENLEDSTSIIKRYRLTKSKVSKDFLKMLNIDINNIQDQNSNTVLNHTNNTSTNNNNNMNNNYTNMLSSKRYTLTFFDKIKLEKRVVSISSKNLYEFITIYFEDGTIKTYSHNEWKLESDKLKNQNNLGKYRNILTSVISCGFQFPKTFHSSSLEWMIISPSMTGAIVKLKKRQTPNYFAIETDVSDGERDRLTATAYAFGFVSSTHRQLSSEDLSISCKTHLMKINEVNNERAHEFVTSLMTSIYSFFNMTPDAPKDILDKMISSRPVQKTILLQLELSNGLKQTNIYEMSRSIMSLRNVLFAFNGVARNLQFAIEQINSNSISHSNGKLFQAIFTKQDLIHSLIPIAKWFIKFVTYLIQGAILMINDNNSKSNTLVLGILGAKIPRTIMISILSEINKVIQLITKYPETTFPILDESSNFLRMIILESPINLEDLERLLIDVNTSLIKFTEHKPYFIKNPRLLVTSAVLEGDKDVENYLLSLVKNTFLKDDTTSNIFFSDTNGLRITNDVFFQKELLQSLQPLSKGLVVDQEILPNKFQDSKSISILTYDSISYEEFTLDEIQGKKLKRCCRCGSITRAGYTIFPSRAVIATSIQTKRWPTMYSRVCICSGYLYELDTYTPTGMTPSNAIATPLLNNTNQNSNSELDLNSGDNSNNTHLHSSTHHHHNQSHHPMEGIVSTNTNTPAPTMI |
Length | 1079 |
Position | Tail |
Organism | Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) (Yeast) (Kluyveromyces blattae) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Tetrapisispora.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.326 |
Instability index | 37.63 |
Isoelectric point | 8.04 |
Molecular weight | 122709.11 |
Publications | PubMed=22123960
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | core mediator complex GO:0070847 IEA:EnsemblFungi
mediator complex GO:0016592 IEA:EnsemblFungi
|
GO - Biological Function | RNA polymerase II activating transcription factor binding GO:0001102 IEA:EnsemblFungi
|
GO - Biological Process | negative regulation of transcription by RNA polymerase II GO:0000122 IEA:EnsemblFungi
positive regulation of transcription by RNA polymerase II GO:0045944 IEA:EnsemblFungi
regulation of establishment of protein localization to chromosome GO:0070202 IEA:EnsemblFungi
RNA polymerase II preinitiation complex assembly GO:0051123 IEA:EnsemblFungi
|
Interaction
Repeat regions
Repeats |
>MDP29579
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 376.01| 103| 151| 94| 214| 1
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94- 199 (167.57/118.33) PSI.LGSLPVSNNASKSssHHFFYS.ISSVYwNNWFNLPGDML.AVCDELGNMTMLILGQ.SPQGP...VTIDKLTM...LFQD.NVYKLHNQLLPLQQVNEKSDKIERKETKKEYQ
245- 347 (139.21/101.66) PSMkYGCLAVRKNGQVD....FWYQ.FSNS..KNHKKITTHLLnAQNKETNELDWLQFAKiTPMNEdqcILITTFSR...ISKRlTFYKLHVNW....NINPTNPTIINNPSLRVYH
622- 688 (69.23/36.80) ...................HEFVTSlMTSIY..SFFNMTPD...APKDILDKM....ISS.RPVQK...TILLQLELsngLKQT.NIYEMSRSIMSLRNV.................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 185.40| 62| 472| 2| 65| 2
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2- 65 (103.72/82.67) NILSSSSVS...WSKIGLIAYADNVSTEgNL....SITF....LETINGLNWRFhEPQKYCIHPHLHETQ................FHSSS
452- 540 (81.69/55.08) NMLSSKRYTltfFDKIKLEKRVVSISSK.NLyefiTIYFedgtIKTYSHNEWKL.ESDKLKNQNNLGKYRniltsviscgfqfpktFHSSS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 85.54| 26| 174| 701| 737| 3
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712- 737 (45.15/40.30) SHSNG.KLFQAIFTKQDLIHSLIPIAK
888- 914 (40.39/16.37) SDTNGlRITNDVFFQKELLQSLQPLSK
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