<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29574

Description Uncharacterized protein
SequenceMGASSTARLPSLGAQSIPPLFSHLQHTSNAKVIARWSITIRSFRAVPVPTNAWPSSDQYDSSFARDSFDTDDLSGSNNAYASSSSGSNQISNIGGTSSATGGSSSSASGAPPLTKPRTMWQVWLSDHPGVVFVIVEDTGRPSRAKAWRDWEVSTKKWKNLKRREIEARRKQQHKTWPEAVKEAEQQHDESKDTTTGAQDNTDGSDNKPAAVPTQSAEAIGEDAVPMDVDTATTEKTAETKSATTSATTSTSTGEVQAGPNPSASAEQATETEQLQQAAEDIIETAGPKPKLRLPSHTRYTVSAVTSSMSAMLTGLNLPPPHGAPAGTAGPGAWVPRGAAVSIEGLVLEINSQNLNALPGISPALASVSSIDDTTTVSPSNGTGRSAANGSGGVDWRVRVGSVMGGGGRSAGAIVEAEFLPVSTLLPTSKFMHDFLHSLFPPGLVPMPPPAPTSVPGMLNQNGLRVSGGLSQAASATGTPRAMNATLGSATGMNGDGAVAGPAGRGSGFSYTIGGGAGAGAAPPNRHFNIPVVSDQLWEEVVPRSGEGWRQRIAKRSYQLRQAARQQRRQRKNATQNRDQVSSAAAKKHNPTQDAYAWHAFGSDDDAEAHTNRDWQDENEDDLSSSASEAEQATPNSTAGASAGGLPGGLLGTAVTVQQADEDDDDDDDDCPLGAPIWSNASPNSAAPNSANPLSGTPATAPESVQTKKEDTVQLIFQGLRPDQGSESAAEADGWTGIERGRRIAFQYVQMLRAEGII
Length757
PositionHead
OrganismUstilago hordei (strain Uh4875-4) (Barley covered smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
Aromaticity0.05
Grand average of hydropathy-0.561
Instability index48.06
Isoelectric point5.23
Molecular weight78962.46
Publications
PubMed=22623492

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29574
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     505.71|     119|     121|     273|     391|       1
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   95-  210 (139.25/57.60)	GTSSATGGSSSSASGAP.PLT.....KP.RTMWQV..WLSDHPGVV...FVIVE...DTGRPSRAKAWRDWeVSTKKWKNLKRREIEArRKQQHKT..WPeAVKEAEQQHDESK.DTTTGAQDN.TDGsdnKPAA....
  214-  271 (33.41/ 8.34)	...QSAEAIGEDAVPMDvDTA.....TTEKTAETKSATTSATTSTSTGeVQAGP...NPSASAEQATET......................................................................
  273-  391 (194.76/83.44)	QLQQAAEDIIETAGPKP.KLR.....LPSHTRYTVSAVTSSMSAMLTG.LNLPP...PHGAPAGTAGPGAW.VPRGAAVSIEGLVLEI.NSQNLNA..LP.GISPALASVSSID.DTTTVSPSN.GTG...RSAANGSG
  394-  515 (138.29/57.15)	DWRVRVGSVMGGGGRSA.GAIveaefLPVSTLLPTSKF...MHDFLHS.L.FPPglvPMPPPAPTSVPGML.NQNGLRVS.GG..L....SQAASAtgTPrAMNATLGSATGMNgDGAVAGPAGrGSG...FSYTIGGG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.56|      16|      18|     558|     575|       2
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  560-  575 (26.25/21.34)	RQAARQQRRQRKNATQ
  577-  592 (26.31/13.24)	RDQVSSAAAKKHNPTQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.89|      46|      46|     616|     661|       3
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  616-  661 (77.04/31.68)	DENEDDLSSSASEAEQATPNSTAGASAGGLPGGLLGTAVTVQQADE
  664-  709 (81.85/34.10)	DDDDDDCPLGAPIWSNASPNSAAPNSANPLSGTPATAPESVQTKKE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29574 with Med20 domain of Kingdom Fungi
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