<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29566

Description Uncharacterized protein
SequenceMVKQDAEVIKEFNDLVNMSASELEKWLKSSDSISSGWKNGDSGETVGHNSGTKIVDILKRNPDKKKDKYTEEDIKHMRKVVSYNKRHLAQERHLKEKKGEEELKKTKSYKSLKNDPSSSSSSTQPQFKSDAPLPTALNLGRIGTASTTASTLAASSTTSSSSAAQSSKAYLDGLEESVNKTIDGEIETLLGSYKELVMLAGVADKDKHRLAQEGFQSEARADIMVRAVQNLTLLSESLKLSLLLSKTPDPALNDEALELIESTEREKMRVASLLAEVLGLDAGESEGLVKDLDTGLVDKLGDTEMEDDELMEDVSAG
Length317
PositionHead
OrganismUstilago hordei (strain Uh4875-4) (Barley covered smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
Aromaticity0.03
Grand average of hydropathy-0.621
Instability index40.70
Isoelectric point5.01
Molecular weight34567.29
Publications
PubMed=22623492

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29566
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     365.39|     117|     124|      69|     187|       1
---------------------------------------------------------------------------
   20-   63 (28.97/ 8.91)	................................................................................ASELEKWLKSSDSISSGWKNGDSGETV..G.HNSGTKIVDilkRNPD
   69-  187 (181.11/95.94)	YTEedIKHMRKVVSYNKRHLAQERHLKEKKGEEELKKTKSYKSLKNDPSSS...SSSTQPQFKSDA.PLPTALNLGRIGTASTTASTLAASSTTSSSSAAQSSKAYLD.GLEESVNKTID...GEIE
  193-  306 (155.32/77.49)	YKE..LVMLAGVADKDKHRLAQEGFQSEARADIMVRAVQNLTLLSESLKLSlllSKTPDPALNDEAlELIESTEREKMRVASLLAEVLGLDAGESEGLVKD.....LDtGL...VDKLGD...TEME
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29566 with Med22 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVVSYNKRHLAQERHLKEKKGEEELKKTKSYKSLKNDPSSSSSSTQPQFKSDAPLPTA
2) WKNGDSGETVGHNSGTKIVDILKRNPDKKKDKYTEEDIKHM
79
37
136
77










Molecular Recognition Features






MoRF SequenceStartStop




1) LEKWLKS
23
29