<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29565

Description Related to MDR1-Mac1p interacting protein
SequenceMDAHTLNAWTRFALQKGGIGTCTALIDNPATEPEDLMFMAGEKIIVLRRLDDDSPDANPRPTSSTSARRKSDALSDSEAWFLGYCEGVVGRFKGAHVLIHGRLKKPVLMRRSAAGSIRDSSMRPMSRSEAAKMHLSQVPAGIPFTSVNSDGEEDAAASSPVDRRGHALPPPAQHSAGLSSSHPHHPAAASAASTFAKNGTFGLTTPPLSDEGHLRRQPLPRRPVQDNDEDSDGSTSLLPWARHSRESSNASSSAPAPRPNNLLARNGSLARPSAPLGTSSPFTHHYAATQAQNVSNLPTIHHLPPSPISSSESPIRAESSNLLASITTTSSSKSNPPSADTTADSTIINTVTGNSSAADLASRTSCTSSNYTTSTNDDSDDEQGNENRRRDYTFSIYDVYGRDSVAFPNFDFRQYGSKSSLAKSTESLNIPSQRSSNATDDRLQLPLSPQQCPQQRPQPPSADTSRAQQSMQQQQQQQQQQQQQQQQQQQQQQQQLGPMAGGIPRRPGQLVVPAASDTSIPLALRSPSGRRPSAAPDPRMADVNGPRPPLNMASSLRRQVETPPVPAPGAQQVSPLDAAGAALAAGPSADAGPMPRGPGAFDPHRRPSQHNTAAPVSARMHPSTLPPILTGAPGTGTSLGSKSSASTSAFGPGSSPPVSAGTSASNSQDTNFSHRPGFAEARSRHRSMSVGTLNKAENLALNETDADGAETAHAPILAAAPQPPHLTALGSANNTTRPSFRTSASSARSRNGQATSPGFGPVRASSDRLSERERTNSGHGSGLLRKNPSNPTPGLHGGSGLHGLSPMARSASPMSQLSAPSPTFHHQDEAGRRTSAASTSAYSPGPRSPALRSPLGTAIAPGPASAPVTPGGGPGPHSNGIFAFPSSPGSVASPSGIGNRGFDAMGFIIEPNVPPCMPQVDDPELKDKWLSVLNENDVTAAKKSRKVKKLVRSGVPQSLRHEVWLFLANASVRRRPGLFEQLCKTSQGSKGKRGKEEAYETIEKDLHRTLPDNQLFIGENATGRADLEGILKSYVHFNPMLGYTQGMGLLAAFALIQMPAEDAFWLLCAVLRNPQMEEYYSAGMKQLHVDSVVFSNLLQSMDAELHDRFEQVGLSPIMFTPNWFLPLFTRVLPWTTLVRVWDVFFYEGPTWMLRVALAIVRILREQLMNRSICPTAGEMLQLLLHPPPHNLTAENVLNCAFSVKLKDGEMRKLSRTASKLVREKNSLNQAADARGRASSRRPSASAKASRSTSAPAKR
Length1258
PositionTail
OrganismUstilago hordei (strain Uh4875-4) (Barley covered smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
Aromaticity0.05
Grand average of hydropathy-0.571
Instability index64.82
Isoelectric point9.65
Molecular weight134151.15
Publications
PubMed=22623492

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29565
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.01|      12|      15|     468|     479|       1
---------------------------------------------------------------------------
  448-  457 (16.11/ 6.52)	..SPQQCPQQRP
  468-  479 (25.24/14.13)	QQSMQQQQQQQQ
  484-  495 (24.65/13.63)	QQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     587.46|      73|      73|     743|     815|       2
---------------------------------------------------------------------------
  124-  183 (61.25/14.46)	..PMS.....RS.EA..........akmHL..S...QVPaGI.....................P.FT...SVNSDGEEDAAAS.........SPVDRRGH..........A..................................LP.PPAQHsaGLS.SS.....HP
  184-  265 (41.70/ 7.60)	HHPAA.....ASaAStfakngtfglttpPL..S...DEG.HLRRqplprRPVQdndEDS....DGSTsllPWARHSRESSNA................SS..........S..................................AP.APR.........PnnllaR.
  266-  314 (38.22/ 6.37)	NGSLA.....RP.SA.............PLgtS...SPF.THHY.....AATQ...AQNvsnlPTIH...HLPPSPISSSESP.....................................................................................
  496-  547 (75.70/19.54)	LGPMA.................................G.GIPR.....RPGQ...LVV....PA........ASDTSIPLALRS..PSG......RRPS..........A..................................AP.DPRMA..DVN.GP.....R.
  548-  581 (42.45/ 7.86)	..P.........................PL..N...MAS.SLRR........Q...VET....P......PVPA..............PG....AQQVSP..........L..................................D..........AA.GA.......
  582-  636 (77.06/20.01)	.ALAA.....GP.SA.............DA..G....PM.PRGP.....GAFD.................PHRRPSQHNTAAPVS..A........RMHP..........S..................................TL.PPILT..GAP.GT......G
  637-  726 (61.19/14.44)	TSLGS.....K.....................S...SAS.T..S............AFG....PGSS...PPVSAGTSASNSQDT..NFSHRPG.................faearsrhrsmsvgtlnkaenlalnetdadgaetAH.APILA..AAPqPP.....HL
  727-  803 (102.62/28.99)	TALGSannttRP.S...................frtSAS.SARS.....RNGQ...ATS....PGFG...PVRASSDRLSERERT..NSGHGSGLLRKNP..........S..................................NP.TPGLH..GGS.GL.....HG
  804-  878 (87.27/23.60)	LSPMA.....RS.AS.............PM..S.qlSAP...................S....PTFH...HQDEAGRRTSAASTSaySPGPRSPALR.SPlgtaiapgpaS..................................APvTPG....GGP.GP.....HS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.15|      19|      20|     359|     377|       3
---------------------------------------------------------------------------
  359-  377 (32.05/20.32)	DLASRTSCTSSNYTTSTND
  380-  398 (33.10/21.24)	DDEQGNENRRRDYTFSIYD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29565 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ADLASRTSCTSSNYTTSTNDDSDDEQGNENRRRDYTFSIYD
2) FPNFDFRQYGSKSSLAKSTESLNIPSQRSSNATDDRLQLPLSPQQCPQQRPQPPSADTSRAQQSMQQQQQQQQQQQQQQQQQQQQQQQQLGPMAGGIPRRPGQLVVPAASDTSIPLALRSPSGRRPSAAPDPRMADVNGPRPPLNMASSLRRQVETPPVPAPGAQQVSPLDAAGAALAAGPSADAGPMPRGPGAFDPHRRPSQHNTAAPVSARMHPSTLPPILTGAPGTGTSLGSKSSASTSAFGPGSSPPVSAGTSASNSQDTNFSHRPGFAEARSRHRSMSVGTLNKAENLALNETDADGAETAHAPILAAAPQPPHLTALGSANNTTRPSFRTSASSARSRNGQATSPGFGPVRASSDRLSERERTNSGHGSGLLRKNPSNPTPGLHGGSGLHGLSPMARSASPMSQLSAPSPTFHHQDEAGRRTSAASTSAYSPGPRSPALRSPLGTAIAPGPASAPVTPGGGPGPHSNGIFAFPSSPGS
3) MRRSAAGSIRDSSMRPMSRSEAAKMHLSQVPAGIPFTSVNSDGEEDAAASSPVDRRGHALPPPAQHSAGLSSSHPHHPAAASAASTFAKNGTFGLTTPPLSDEGHLRRQPLPRRPVQDNDEDSDGSTSLLPWARHSRESSNASSSAPAPRPNNLLARNGSLARPSAPLGTSSPFTHHYAATQAQNVSNLPTIHHLPPSPISSSESPIRAESSNLLASITTTSSSKSNPPSADTTADSTIINTVTGN
4) NQAADARGRASSRRPSASAKASRSTSAPAKR
358
407
109
1228
398
890
354
1258










Molecular Recognition Features






MoRF SequenceStartStop




NANANA