<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29564

Description Uncharacterized protein
SequenceMTSMQSSLLRGGNGPTMPSPKRAKLDDAQLPEAYQQQRPPWRPPLHPAAVGGDLPDLFPTKPYQPENDMSQVSVRKGFAAHPYVRNESFSAHEMIYTRLASPDTIHLLSSCMDEILQRRRELDRNNVAPSQYRPPSRVTLNEAKLANYVKDLADPSVPLTRLSRSVPHGFRGEKLFEMLWAGGALPSATAAGANANYFNPRNAPSTQQFQALSCSAASISAPTAPRKSVDISRAVWFIRALGAAELSSLRNKSAATIVPEITSNLCTWMAKQVAELNLIQAAESSSTAAAAAAAAAASPAPLSPSPHLSRTFGAGPSSLSRSMAAAHFAAPTPPHPNPASSPSPAPAKQVCTVLQNPVDQERWTAKWSYSLSLARHLHAQHLLDPSLLVRWIVDAFAASNLVQLPFLVELVQEVLLLILRRRCFVKPFLTALLVQIPSLDARLDRAAAGGLRNKLMLLLRIVCETCPDLLISPRLWFEHAGTLAQLLNQLNAETEADAVGTTVATQLSDYVERTVKPRVERLLLQSQRRSTDDAHHTTSTPSPASPTLQQHMDIHALDSFDMKTVDRVFLQNGPPGKSPAKYTRDDAFWAPRVETILTWACTDRRIGVARQYLAATLIEKIRFGVSWQETSEGSDQLSLPAFDFEHHAKKTRKINVEPMLIKWLGDVEATLNMGTDNSPSELRAGLLATIELSSIVVLTGELARRGVFSYTKYLQRLIARGMTTAPSSSKEDDNEAAALASAPPPALGSAASRDSLHLRLLRSLPLYDQPASVYQQRRQAIYGDRTKETYEDAAQRRALRQLQSFLPFAFAETPDSGIEIPAIATMCTSAAPPSSGDIDDTNPNEALSRLWSASRYVRCKIFRTDLVPAVSARIDYLNGEQLSRIAAVLVMGDDFESLAQLLATLLLRPLSDSLARATFNLVIEHSLVWRSMDIMGTLNQLVRQQLNHSSSIRNDRQAVMASTTLLRLRTLIEGIPSRMHAPVPELASERDAIQQHVRALRPNVDVLLDRFAQKLQQQHASSEVGQNSAATPAAEGSDILTPFRSLFLQPDATSDEIIEGTIVEGVLERPNETLIPAAVRLIDQLYLEASLEIDERHARWLAHLANSMQQHMHAESSVKALLGLLTRLIAHGTLNLQLAMDTFLLPYLLSLVRRMTDPATRNAESAFHLVAVVGSLGQMFASSLDDVSNPTLSYEDARAFGAQAKLLFAQVNLPLLLRTASCLICASDEWSPMEASDKAQIESFWKSLLRSEPMQIAFRQDARTCMLTIRDTCKSMWGCNPSRVMDIAMACLHSNSLLLRDVGSIDAASVRARLDGWDTAVVANELVEIFERLQLVESSFQSRADSKTRALASGIFDDLFVRLPDIGAQLMRDCQSSGLISRFTDIGIKILSDKVKAGADAVRTWSKAMADDAGVEAKADVQDATPTQNTVSKGSSGEGIVAADERLPESQVEFTMRSVLHMCEQQDSFIFNATDADSCGQLLVHVIASLEAAVASSTKIGSTGDDGLATRLSALLDSRLTLQLLHLVMRFGCLWNGSMKATALRLVKALLELTRQAGARAECGRQFVLLLDSVSFVLDELPPQLLSACIPDLETQLQQVDLATSERTEKLQHLSFMLDNPARPAGWFVASSARAAVKRGWFTPAGLNPWDCAEYLDINAAGAHTTQTGKALGQMQARNLSNPTATAMVGDAFSQTNPVLPSARSGWPDKLTLNTAIPLCMLGVGVTRDLVPHHASRLAASPTGLSDSCTTPCLAASTEEERCRRLPISVESERSYGSRIAGEPIFSRHLRRGLLPHPTLPSLHKGKAPTTNANVAHGVPLKRGEEPRARMSEEAIPVIDLTYDDLAGAEHFQPSAARRSGRGASWKRSMSQRD
Length1874
PositionKinase
OrganismUstilago hordei (strain Uh4875-4) (Barley covered smut fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
Aromaticity0.06
Grand average of hydropathy-0.159
Instability index51.79
Isoelectric point6.77
Molecular weight204629.94
Publications
PubMed=22623492

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29564
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.60|      39|      98|      21|      62|       1
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   21-   62 (70.39/49.06)	KRAKLDDAQL.PEAYqqqRPPWRPPLHPAAVGGDLPDLF.PTKP
  118-  158 (61.22/35.04)	RRRELDRNNVaPSQY...RPPSRVTLNEAKLANYVKDLAdPSVP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.11|      22|      98|    1698|    1719|       2
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 1698- 1719 (41.09/22.98)	PVLPSARSGWPDKLTLNTA..IPL
 1798- 1821 (35.02/18.45)	PTLPSLHKGKAPTTNANVAhgVPL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     314.81|      89|     104|     718|     810|       3
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  718-  809 (138.49/84.83)	.............IARGMT...TA..PSSSKEDDNEAAALASAPPPALGS..AASRDSLHLR.LLRS..LP.LYDQPASVY...QQRRQA...IYGDrtkeTYEDAAQRRA...LRQLQSFLPFA
  810-  917 (94.31/49.96)	FaetpdsgieipaIATMCT...SAapPSSGDIDD.......TNPNEALSRlwSASR.YVRCK.IFRTdlVP.AVSARIDYLngeQLSRIAavlVMGD....DFESLAQLLAtllLRPLSDSLARA
  919- 1001 (82.02/42.39)	F....nlviehslVWRSMDimgTL..NQLVRQQLNHSSSIRNDRQAVM.....ASTTLLRLRtLIEG..IPsRMHAPVPEL...ASERDA...I...........QQHVRA...LR.........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.15|      29|      98|     184|     224|       4
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  184-  212 (50.70/17.54)	ALPSAT.AAGANANYFNPRN.APSTQQFQAL
  282-  312 (40.45/11.37)	AESSSTaAAAAAAAAASPAPlSPSPHLSRTF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     208.98|      69|     102|    1446|    1517|       5
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 1446- 1517 (103.36/97.59)	RLPESQVEFTMRSVLHM.CEQQ.....DSFIFnATDaDSCGQLLVHVIASLEAAVASSTKIGSTGDDGLaTRLSALLD
 1545- 1619 (105.62/83.54)	RLVKALLELTRQAGARAeCGRQfvlllDSVSF.VLD.ELPPQLLSACIPDLETQLQQVDLATSERTEKL.QHLSFMLD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.34|      23|      25|    1050|    1074|       6
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 1050- 1074 (33.84/28.47)	PDATsdEIIEGTIVEGVL...ERPNETL
 1076- 1101 (34.50/21.73)	PAAV..RLIDQLYLEASLeidERHARWL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.23|      22|      25|    1385|    1407|       7
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 1365- 1377 (22.75/11.49)	DIGAQLMRD..........CQSS
 1385- 1407 (31.70/24.36)	DIGIKILSDkVKAGADAVRTWSK
 1412- 1433 (34.78/21.86)	DAGVEAKAD.VQDATPTQNTVSK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.64|      26|      30|     382|     407|       8
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  382-  407 (45.61/26.91)	LLDPSLLV....RWIVDAFAASNLVQLPFL
  410-  439 (39.03/21.97)	LVQEVLLLilrrRCFVKPFLTALLVQIPSL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.74|      10|     557|     548|     559|       9
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  548-  559 (15.61/16.93)	LQQHMdiHALDS
 1108- 1117 (21.13/13.90)	MQQHM..HAESS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.11|      20|      25|    1121|    1140|      10
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 1121- 1140 (32.65/23.11)	LLGLLTRLIAHGTLNLQLAM
 1148- 1167 (33.46/23.91)	LLSLVRRMTDPATRNAESAF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.69|      30|      30|    1216|    1245|      11
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 1216- 1245 (53.01/38.37)	LLRTASCLICASDEWSPMEASDKAQIESFW
 1248- 1277 (53.68/38.97)	LLRSEPMQIAFRQDARTCMLTIRDTCKSMW
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.80|      21|     201|     318|     338|      12
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  318-  338 (40.58/22.42)	SLSRSMAAAHFAAPTPPHPNP
  526-  546 (39.22/21.39)	SQRRSTDDAHHTTSTPSPASP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.67|      36|     201|     241|     276|      13
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  241-  276 (61.38/37.66)	LGAAELSSLRNKSA..ATIVPEITSNLC....TWM..AKQVAEL
  443-  486 (49.29/28.77)	LDRAAAGGLRNKLMllLRIVCETCPDLLisprLWFehAGTLAQL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.58|      25|      27|    1309|    1333|      17
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 1309- 1333 (40.95/22.58)	SVRARLDGWDTAVVANELVEIFERL
 1339- 1363 (40.63/22.35)	SFQSRADSKTRALASGIFDDLFVRL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29564 with Med12 domain of Kingdom Fungi
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