<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29562
Description |
"Related to SSN8-DNA-directed RNA polymerase II holoenzyme and SRB subcomplex subunit, cyclin C homolog" |
Sequence | MSANYWASTQCNNWLLDRPQLDLARKQDVRYATKLECDAIAVFFCNLITTITKRLNLRQRVTATSCVFFRRFFSKNSFSSVDPFLVCATCIYVSAKTEESPIHIKSALGEATRSFQEVGYRGLPSDNSSLAEMEFCLLEEMEFDLILFHPYRSLIALYDSFGCASASLGKETGIAAEIEAFGVIKGLRSVEEKQGQGGGGGGGGGGGGKLEEFDQQVLQLSWFVLNDCYKTDIPLMYAPYLVALSALYLALMLHGPAADRINCSLENMQTARLKHNKALANGSIKPEDLAKEARPPTPPKEEALTFFASLNVSLPMLAEVVQQMIAGYKMQNDVATLVRDGPGMVKLLERMRERRRAELVDSKTRGSEGMYR |
Length | 372 |
Position | Kinase |
Organism | Ustilago hordei (strain Uh4875-4) (Barley covered smut fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina>
Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Ustilago.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.134 |
Instability index | 47.87 |
Isoelectric point | 6.48 |
Molecular weight | 41241.96 |
Publications | PubMed=22623492
|
Function
Annotated function |
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | cyclin-dependent protein serine/threonine kinase regulator activity GO:0016538 IEA:InterPro
DNA-directed 5'-3' RNA polymerase activity GO:0003899 IEA:UniProtKB-KW
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP29562
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.85| 13| 88| 135| 158| 1
---------------------------------------------------------------------------
146- 158 (24.96/ 6.46) ILFHPY.RSLIALY
235- 248 (19.89/10.22) LMYAPYlVALSALY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.60| 13| 30| 169| 181| 3
---------------------------------------------------------------------------
169- 181 (21.45/12.06) GKETGIAAEIEAF
201- 213 (24.15/14.40) GGGGGGGGKLEEF
---------------------------------------------------------------------------
|