<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29557

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDTYIDGRFERLEKALANLIDSVTKFHPSIHQGDELDAADKELTKGLEEVQTHQNNYLRIQQLRESSAALDTQIRETLSNLATTRKDIVTTHTTTFPAGPTYAIAYEELLNYARRISKTTMPPAGTIKAVPATVAPPTPEGQTPGVQTPGPDSQTASVMTPSAPPSSQVQSPAVMNGTPHVSQDPATQQSAMSANTSLPSEWTQFLNPLTDQIFLPWPNDLQLGAGALAAHQVLLEQGINPKGYDPAEEEERKRLEEEERKKKEEEDRIAQEEREKKLREERERQRIERERQREKDQEAWRRASLVGGPAAPGEQRSPTGPPQQKAQFQFTNLDDLDDDDDDD
Length343
PositionMiddle
OrganismGibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (Wheat head blight fungus) (Fusarium graminearum)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium.
Aromaticity0.05
Grand average of hydropathy-0.962
Instability index55.74
Isoelectric point4.82
Molecular weight38295.75
Publications
PubMed=17823352
PubMed=20237561
PubMed=26198851

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364141
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP29557
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.97|      14|      15|     256|     269|       1
---------------------------------------------------------------------------
  256-  269 (24.21/13.66)	EEEERKKKEEED..RI
  272-  287 (17.77/ 8.32)	EEREKKLREERErqRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.08|      27|      27|     120|     146|       2
---------------------------------------------------------------------------
  120-  146 (50.03/22.19)	TMPPAGTIKAVPATVAPPTPEGQTPGV
  148-  174 (49.05/21.64)	TPGPDSQTASVMTPSAPPSSQVQSPAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.09|      27|      28|      30|      56|       3
---------------------------------------------------------------------------
   30-   56 (45.03/28.42)	IHQGDELDAA.DKELTKGLEEVQTHQNN
   60-   87 (38.06/23.00)	IQQLRESSAAlDTQIRETLSNLATTRKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29557 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IFLPWPNDLQLGAGALAAHQVLLEQGINPKGYDPAEEEERKRLEEEERKKKEEEDRIAQEEREKKLREERERQRIERERQREKDQEAWRRASLVGGPAAPGEQRSPTGPPQQKAQFQFTNLDDLDDDDDDD
2) TMPPAGTIKAVPATVAPPTPEGQTPGVQTPGPDSQTASVMTPSAPPSSQVQSPAVMNGTPHVSQDPATQQSAMSANTSLPSEWTQF
213
120
343
205










Molecular Recognition Features






MoRF SequenceStartStop




1) PPQQKAQFQFTNLDDLDDD
2) QEAWRRASLVGGPAA
321
297
339
311