<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29535

Description Uncharacterized protein
SequenceMAIQDKVENNDPTVTVGLAVSSSKSSKYAVQWAVKNFCTNGMVRFVLIHVLQRITTVPTPMGNYIPIDKVRADIASAYEKEVECKARTMLLFYKNMCDEKAKAEVLVVKGEDVAETISNVVSMYEIHKLVVGDSSQGNFIRKSKGTRTSSQICRSVPSFCAVYVVSKGGLSAVYSPGFEGHKSSELFLSSDSSKTEIHSDDKPSLSDATPSRSFRSNLTWENLESLSSADHDRPRSLHEYLTESTSASVGDNNSNSPCASGQTPRPSNVLISDKAPMTSSPLQELMLSEDMDDVNSELEKLRLELRHIKGVCKLVQDESINASQHVTDLAAKRAEEEARLSEVYSRINRVNEQAHQEKEQRNALEAQCRHVRDLARKEALQKQILQLRTSKEADKMQRLEKLLELDGMSYSTFTWEDIESATSSFSEALKIGSGSNGTVYKGNLRQTSVAIKVLTSDDSHRIKHFKQELEVLGKIRHPHLLLLIGACLDRPCLVYEYMENGSLEDRLQLKGGTAPLPWYQRLRIAWEIALALVYLHSSKPKPIIHRDLKPANILLDSNFTSKIGDVGLSTLLPLGDALSTTRTIFKDTDLVGTLFYMDPEYQRTGQVSTKSDTYALGMVLLQLLTGKPPVGLADLVEQAVENGHLVDILDKSAGKWPAQEAHELAQLGLSCLEMRSKHRPDLKCKVLVELERLKKIASAVSDPVRPVISGPPSHFICPILKRIMQDPCIASDGYSYDRVAIEMWLCENDMSPITKSRLPNKDLVPNHALLCAITSWKAEARD
Length782
PositionTail
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.334
Instability index41.08
Isoelectric point6.52
Molecular weight86954.30
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29535
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     222.04|      67|      79|     398|     464|       1
---------------------------------------------------------------------------
  187-  228 (30.96/14.06)	.......FLSSDSSKTEIH.....................SDDKPSLS.DA..TpsrSFrSNLTWENLESLSS......................
  398-  445 (68.40/40.30)	........................................RLEKLLEL.DG..M...SY.STFTWEDIESATSSFSEALKIGSGSNGTVYKGNLR
  446-  523 (95.19/59.08)	QTSVAIKVLTSDDSHRIKH..........fkqelevlgkiRHPHLLLL.IGacL...DR.PCLVYEYMEN..GSLEDRLQLKGGTAPLPWYQRLR
  527-  587 (27.49/11.63)	EIALALVYLHSSKPKPIIHrdlkpanilldsnftskigdvGLSTLLPLgDA..L...ST.TRTIFKD............................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29535 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HDRPRSLHEYLTESTSASVGDNNSNSPCASGQTPRPSNVLISDKAPMTSSPLQELMLSEDM
231
291










Molecular Recognition Features






MoRF SequenceStartStop




NANANA