<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29534

Description Uncharacterized protein
SequenceMGRLFVSGGLGAPDFYPQTLSCAEETLTKEYVQSGYKDTVEGIEEAREIVLSQIPYLSKPDIATKCKEALKKRFRAINESRAQKRKAGQVYGVPLSGSLLTKPGMYPEQMHSNEDTRRKWIEALVQPNRRLWSLAEQVPRGFRRKSLFNYLIRYNVPLLRASWLVKVTYLNQVQTSSNNVSSAAPDSLRSQHWTKDVIEYLQLLLDELCSKNGFFGLPSSQEQSLPCLVAGDSPIKLKTGASPASADVEEPSLHFKWSYMIRIVQCHLMEQLLVPSLLIEWVFNQLQERDSTEVLELLLPIVLSLVDTITLSQTYIHMLVEILIQRLSDASPGSLSVKNNPKRSSITSALVELLQYLILAVPDTFVSLDCFPLPSVVAPDVYGKGALLKIAGGGKIASSRRQNASRHLSCGYAICSVQRRASDLSLVANPNLQVRGAANVVQALDKALVTGNLTAAYTSVFNYLSDTLMEETWIKEVSPCLRSSLMWMGAVELSLVCSVFFICEWATCTFRDCRTSQCQNVKFSGSKDFSQVYMAVSLLKDKMNEINNLSSSKSSSQLAMKDHLKSGTLNNSSIKVTAMETASGFRDSTGSIDENNKKDIFSSPGPLHDIIVCWLDQHEISDASGFKSVDVFMTELIRSGIFYPQTYVRQLIVSGITIWNDSLFDLEKKTRHYKILKHLPGFCLFNILEEAKIAEDQVLYEIVSTYSSERRLVLSELSSGLATDANVEGRVPLSSCLQKQPDLLMDSTDDNHGRVAVQVEEAESGREETKKTKKGQTDLVDSEEDVGHAKTGCKDSSRTKRQKLDKNVFPFQGSPLVQSDEEDFWWARKEQKQELFTVETIHQSIEQTSGGKATVVQMTQNIAQLAAARIDGSQGASTSHVCDNNLSCPHHKPGTNSDILKDAYHMSMLTLAEVGKSLKRLRLLERRSISIWLLKSIKQLIEGDEVKHSKANNSISASTVQHSGKIASGWRFGEDELLSVLYIMDTCCDLLSSVRLLIWLLSKIYIGMTTSGQVGRGVMHPKHKENQVFQVAEAFLFSSLLRYENILIAMDLLPEVLSVSMNRTVHKSGERQSTSVAFAYARYFLRKYRDVTSVARWERNFRSTSDKRLLAELDSGKSITGDSIISGISSDCIRQNGGANPDGDHSLVASAVSAIVDNAGHAIAKHLDISGGNNPGVTSINSLNLIQHILNIHINSLALLRETLGDRFSRIFEISLAVEASSAVAASFAPPKAHRSQQSSETHDESGNHANEVPSNPSKCFNVKAVKVSAAVSALVVGAIIYGVVSLERMMVVLRLKEGLDILQFLRISKASTNGVTHSIGNFKIDSSTEVLVHWFKILIGNCKTVYNGVIAEILGDSYVLAFSRLQRTLPLGIVLPPAYSIFAMVLWRPYLYDTSTSNHEDIQLYQSLLGAISDITRHQPFRDVCFRNMHLFYDLLAADVGDSEFAAIVELRSPDECLKALSPLRARVFLNALLDCEIPVTMRDDGTYALEPGCAEASTKNDVKFPERLIEILNVLQPAKFHWQWVELRLLLDEQSLIEKPKNVPYVKALRSLSPNAENFTLSEREKGLTEVILSRLLVRPDAAPLYSELIHLLGKLQESFVMGIKWFLQGQDVLLGNNSVRQQLVNLTQRKGFPMKTQFWKPWGWSKLVGYANANKSSKRKLEVTSIEEREVDGLIDSRKSSNSKSLNVGTSPEGHGSTQKYFTQEALAELVLPCIDRSSSEFRVVFAGDLIKHMGVISEHIKAAVWNGINKLNSSNPSGNEGLSKPNGRKGIFSGSPNIRKHSPVPNDSTTPSASALRSSIWLRLQFIIRLLPVIIADSNMRQTLASSLLSLVGTRVVYEDADSLEPYMDDVLLVCPSENLFDRLLCVLHALLGNSQPSWLKTKPSSKPAVKFLRDLSTIDKEVTKSLQCALDRMELPATIRRRIQVAMPILPTSRLSSITCGPPLLSSAALSPFQCSTSTAGPYQQFPLNWIPTNLSSRCKAALPSQDPNMEIDPWTLLEDGTSCPNTNSGSNSANGVTGDHANLKACSFLKDSVRVRRTDLTYIGSLDEDS
Length2056
PositionKinase
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.162
Instability index48.11
Isoelectric point7.86
Molecular weight227850.96
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29534
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.14|      10|      21|     977|     986|       1
---------------------------------------------------------------------------
  977-  986 (18.74/11.30)	LLSVLYI.MDT
 1000- 1010 (14.40/ 7.02)	LLSKIYIgMTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.46|      19|      20|    1121|    1139|       2
---------------------------------------------------------------------------
 1121- 1139 (33.93/21.67)	GD.SIISGISSDCIRQNGGA
 1143- 1162 (26.53/15.27)	GDhSLVASAVSAIVDNAGHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.00|      13|      15|    1071|    1084|       3
---------------------------------------------------------------------------
 1071- 1084 (19.67/19.29)	RQSTSVAfAYARYF
 1089- 1101 (25.33/18.13)	RDVTSVA.RWERNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.94|      12|      21|    1652|    1663|       4
---------------------------------------------------------------------------
 1652- 1663 (20.81/14.91)	GYANANKSSKRK
 1676- 1687 (20.13/14.11)	GLIDSRKSSNSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.48|      39|      55|    1438|    1476|       5
---------------------------------------------------------------------------
 1438- 1476 (64.43/41.85)	AADVGDSEFAAIVELRSPD...ECLKALSPLRAR...VFLNALLD
 1490- 1534 (56.05/35.38)	ALEPGCAEASTKNDVKFPErliEILNVLQPAKFHwqwVELRLLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      84.44|      15|      55|    1302|    1316|       9
---------------------------------------------------------------------------
 1302- 1316 (24.37/15.74)	ILQFLRISKASTNGV
 1320- 1332 (17.95/ 9.29)	IGNF.KID.SSTEVL
 1338- 1350 (21.11/12.46)	IL..IGNCKTVYNGV
 1360- 1374 (21.01/12.36)	VLAFSRLQRTLPLGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.97|      12|      20|     539|     550|      10
---------------------------------------------------------------------------
  539-  550 (21.24/15.60)	LKD..KMNEINNLS
  560-  573 (16.73/10.35)	MKDhlKSGTLNNSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.87|      11|      20|     837|     847|      11
---------------------------------------------------------------------------
  837-  847 (18.91/16.69)	TVETIHQSIEQ
  854-  864 (18.96/16.75)	TVVQMTQNIAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.97|      34|     625|      15|      55|      12
---------------------------------------------------------------------------
   15-   55 (53.15/51.67)	FYPQtlscaeeTLTKEYVQSG...YKDTVEGIE.EAREI.VLSQIP
  642-  680 (49.81/32.82)	FYPQ.......TYVRQLIVSGitiWNDSLFDLEkKTRHYkILKHLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.98|      22|     627|    1163|    1204|      13
---------------------------------------------------------------------------
  335-  358 (32.11/ 6.43)	LSVKNNPKRSSITSalVELLQYLI
 1169- 1190 (38.88/29.67)	ISGGNNPGVTSINS..LNLIQHIL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29534 with Med12 domain of Kingdom Viridiplantae
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