<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29528

Description Uncharacterized protein
SequenceMAVASARSSLPSSSSSPLPPLSPQPVVPAGVERMLVRAGGGTRSLREIDEEEDDDDDDGGKTYVSVGKDLKDGKANIQWAARKLQPQQGDVNKLLVLLHVHQPADRIMSGLCKVPAKQLEEKELRAYRTIEKDDMNKLLEQYLSYCRAFPKVQAEKLVIEKNSVANGIVELIDQHHITKLVMGTSSFSVKRQVPKSKVAAIVHQQAKPYCQILYICKEALACTREASQFADKGDSPRSSSGSSLSDKSEFPPRSVSLPSWYSGFLGSPDQQSLPRRSNSISHPFPFSRQLENGVENISPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNEMFEQWQQVRNELERSRKEASEGRQKAEKELFEASKMFRARENSLCKEKIAVEERLTREKVSLEKEHLQIYNELQKANEQIMELERKLMHANSLMEELQTVQGELQRQKDNAVKEAEKMSQINCNNVSCSTGAVALTEFTYTEIKEATNDFDESKMIGHGGCGSVYKGFLRHTTVAIKKFNREGITGEKEFDDEVEILGRMRHPNLVTLIGVCREAKALVYEFLPNGSLEDRLQCKHQTDPLPWRMRIKIAADICTALIFLHSNKPKGIAHGDLKPDNILLGDNFVGKLGDFGISRPLNLTNTTITPYHRTNQIKGTLGYMDPGYIASGELTAQYDVYSFGVVLLRLLTGKSPLGLPSEVEAALNNEMLQQVVDASAGEWPPEYSKKLAILALRCCRYDRKERPDLAKEAWGVLQAMVNYPDNKCKIPSFFICPMTQEIMKDPHIAADGFTYEGEAIKDWLQRGHKTSPMTYLSFTHYELIPNNALRFAIQEWQMKQQL
Length858
PositionTail
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.524
Instability index47.57
Isoelectric point6.36
Molecular weight96122.20
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29528
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.28|      20|      22|     241|     262|       1
---------------------------------------------------------------------------
  241-  262 (34.86/23.07)	GSslSDKSEFPPR..SVSLPSWYS
  266-  287 (35.42/17.95)	GS..PDQQSLPRRsnSISHPFPFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.30|      27|      28|     360|     387|       2
---------------------------------------------------------------------------
  360-  386 (47.79/29.72)	EMFEQWQQVR...NELERSRKEASEGR...................QKA
  389-  436 (26.58/12.87)	ELFEASKMFRareNSLCK.EKIAVEERltrekvslekehlqiynelQKA
  452-  477 (34.92/18.65)	SLMEELQTVQ...GELQRQKDNAVKEA...................EK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.50|      63|     260|     528|     606|       3
---------------------------------------------------------------------------
  528-  606 (95.11/84.83)	FLRHTTVAIKK...FNREGITGEKEFDDEVEILGRMRHPnlVTLIGVCReakalvYEFLPNGSLEDRLQckhqtdplPWRMR
  790-  855 (111.39/64.55)	FICPMTQEIMKdphIAADGFTYEGEAIKDWLQRGHKTSP..MTYLSFTH......YELIPNNALRFAIQ........EWQMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.79|      21|      77|     218|     238|       4
---------------------------------------------------------------------------
  218-  238 (37.79/22.87)	EALACTREAS.QFADKGDSPRS
  295-  316 (36.00/21.43)	ENISPIRPNSvDVAPKGCSPNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29528 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGGGTRSLREIDEEEDDDDDDGGKTYVSVG
2) ENISPIRPNSVDVAPKGCSPNSSHQSKGSSPTLTDLDTVDGLSVPVSSSSSEEHQHFMVEANMQNE
3) FEQWQQVRNELERSRKEASEGRQKAEKELFEA
4) MAVASARSSLPSSSSSPLPPLSPQPVVPAGVERML
38
295
362
1
67
360
393
35










Molecular Recognition Features






MoRF SequenceStartStop




1) AGVERMLVR
29
37