<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29524

Description Uncharacterized protein
SequenceMDGGGGGNWRPTQGADPAASGGIDPNAPAPAPAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQIMMKQKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEAYQMVKNLKDQYFPELNDLYNKISLKLQHVDNMVPPQKPTEQYEKMKSFKLMLERTMHVLQLNKGNIQPALRDKIPAYERQIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTPGISASPLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRTTQRQSLSAAVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITHDGTGTSKKMKRDTSAMPLNVSSAGSVNDSLKQTFSIGTPELQSTATSRVKWQKTEINHALMEEIHEINQQLIDTELHVCEDDAESFGATSEGTEGTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKFSILLRGLAEPMSLREIARTWDACARKVIAEYAQQTGGGSFSSSYGCWENCVGA
Length1320
PositionTail
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.03
Grand average of hydropathy-0.777
Instability index73.41
Isoelectric point9.29
Molecular weight144712.29
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29524
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.85|      20|      21|     818|     838|       4
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  654-  673 (28.94/ 6.71)	QGQQTQFQ.QSAGQGPTS...NIP
  821-  844 (23.92/ 7.20)	QSQQMKRQmFQQFQQKQMlqqQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     374.96|      46|      67|     416|     461|       5
---------------------------------------------------------------------------
  147-  186 (55.26/13.02)	QQQA...........................RQ.....P.NSTSV.........................................QSSLTNLGQN..L....PGV.NQTS.TL...QN....................MS.GMPQ
  313-  346 (40.97/ 7.39)	QQQH...........................SQssmhpQ.PS..L.......................QQA.....QP........TQQ.....PN..I....P.L.Q..H.QL...MG...........................
  347-  415 (45.05/ 8.99)	QQQN...........................LQ.....Q.NQLIG.......................QQNgavdmPQ........QQRLPVQSNN..L....LNM.QQTQqM......lnqqsmpshqqqqlgsqaniSTLQQQQ
  416-  449 (59.31/14.62)	Q....................................................................QN.....QQ........QQQLLGTVPN..V....PNI.QRMH.ML...QT....................KAVQQPQ
  450-  509 (41.78/ 7.71)	QQQH...........................AQ.....Q.SSLGLmqpqsqhnqlqqsqqhlmsqfqaQPN.....QL........QQQ.LG.MPQ..Q....PPMqQR....L...QT....................SA.....
  674-  713 (54.63/12.77)	QQ..............................Q.....Q.PSQGL.......................QQ................HDNHTNQMPQasM....PSM...ST.GL...QS....................SGAAGIQ
  814-  883 (38.47/ 6.40)	QQEHhmmqsqqmkrqmfqqfqqkqmlqqqlpAQ.....Q..Q..L.......................QK......QQ........QSQ..MQVPQ..H....HSG.NDAN.ELkvrQG....................AAMKPGI
  884-  943 (39.49/ 6.80)	YQQH...........................LA.....QrNNFYN.......................QQI.....KQgsafpissPQNLQASSPQ..IshhsPQV.DQHN.LL.psQV....................KT.GTPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.59|      25|      26|     746|     771|       6
---------------------------------------------------------------------------
  119-  138 (38.14/12.78)	QNQN....PPGSVPG.LPQGS.NPTQ
  289-  308 (33.42/10.07)	QNA.LNSVPQ.SVQSLLQQ....PTQ
  746-  771 (43.03/18.83)	QGSNFNSLQHGSMSGALQQGStGPMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.27|      20|      25|     195|     218|       7
---------------------------------------------------------------------------
  198-  218 (33.71/17.67)	SQDIYaTQRQMAGRQQQQQQS
  220-  239 (36.57/10.13)	NQLIY.QQQQIMMKQKLQQNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.13|      27|      57|     994|    1020|       8
---------------------------------------------------------------------------
  947-  968 (20.38/ 6.61)	.......NSPY..MpSPSPPVAPSpIPVDSE
  994- 1020 (47.34/24.63)	QSQSIAVNTPG..I.SASPLLAEF.TSVDGN
 1052- 1078 (35.41/16.66)	QSLSAAVSDIGsvV.SMIDRIAG...SAPGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     206.98|      69|     505|      35|     116|       9
---------------------------------------------------------------------------
   35-  116 (99.26/95.99)	GDWRSQlqsearnriVNKIMDTLKKHLpvsVPEgLNEL.QKIAVRFE..EKIYTAATSQSDYLRKISLKMLSMETKT..QQNPGNAQ
  554-  627 (107.72/72.06)	GDWQEE.........AYQMVKNLKDQY...FPE.LNDLyNKISLKLQhvDNMVPPQKPTEQYEKMKSFKLMLERTMHvlQLNKGNIQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29524 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDGGGGGNWRPTQGADPAASGGIDPNAPAPAPAGGDWRSQLQSEARNRIVNKIMDTLKKHLPVSVPEGLNEL
2) PLLAEFTSVDGNQANMPTQVLTKSSAAERPLDRLLKALRT
3) QIISILNSQKRPRVQGQQTQFQQSAGQGPTSNIPQQQQPSQGLQQHDNHTNQMPQASMPSMSTGLQSSGAAGIQHLPASPATNFGVPATQQNVTNAPQATSNLEVTQGSNFNSLQHGSMSGALQQGSTGPMQGTLNAQQQASSSMLSHNSVGTMQANANSMQANANSLQQLKQQQQEHHMMQSQQMKRQMFQQFQQKQMLQQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFYNQQIKQGSAFPISSPQNLQASSPQISHHSPQVDQHNLLPSQVKTGTPLQSANSPYMPSPSPPVAPSPIPVDSEKPLSNLSSSLTNTGQATHQQTNMAPQSQSIAVNTP
4) QKLQQNSLMQQQSLLQPTQMQSSQQPMMQIPSSLQPGQSIPQTQPMVQSSSQGGIQQNALNSVPQSVQSLLQQPTQSAMRQQQHSQSSMHPQPSLQQAQPTQQPNIPLQHQLMGQQQNLQQNQLIGQQNGAVDMPQQQRLPVQSNNLLNMQQTQQMLNQQSMPSHQQQQLGSQANISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQQHAQQSSLGLMQPQSQHNQLQQSQQHLMSQFQAQPNQLQQQLGMPQQPPMQQRLQTSAGMLLQQNNIDQQKQFMQAQRGLQEVSSSTSVDSTAQTGHTGTGTGDWQEEA
5) RKISLKMLSMETKTQQNPGNAQVIQNQNPPGSVPGLPQGSNPTQSSAIPLMSQQQARQPNSTSVQSSLTNLGQNLPGVNQTSTLQNMSGMPQNTMNNGLAQGASQDIYATQRQMAGRQQQQQQSQNQLIYQQQQ
1
1009
640
233
95
72
1048
1003
560
228










Molecular Recognition Features






MoRF SequenceStartStop




NANANA