<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29513

Description Uncharacterized protein
SequenceMDAKVDEMSKAYQELVAAAQAILEARRQPGGENTAAMDAAREAFKQRRKLFAVACDDADALVQSARQSIVSDPGRFVDVVTTPDEDSVRSPTRSSAESSSSSGFGALPDEVLRHILLRLPSAAAAARTSLISRRWRNLWSTLLPKLRFPGVTDLARVGAALRLRVAPVRLLRIESSDRAPDKIVAVLHLAAPLLEGKLCFDVITPAAAAAGAAGTGGAIQIPCFEKATEITIRLRGRLGIQLPPSGVFAKLTALSLSHCRFDDQGQRDLGDAVSSEGCPSLRELRIRDADVVSNLAIRSDSLRLVQLSRLEGIRQLTISAPALTELDLYACLLWGMPMVDIFAPALETLHWVDFFSSSSVRFDEKPNVHRLSVYGMVYGRRNTPGSLQLVQHFTEARDVHLSLVYPSIMDMSCELLVQAVKKLPAVEILSLRLLTIGHTFGPCVYHLLKMSTGIRELKLKLEDHIADGEVPCSSGCVCYEPQAWKKNNISLNFLQKVEINNLSGAERQIYFVKRLLRWTMPELKTITLSFDPSVTVSEKVSRKLLSFSTPGICMGIYLHRNGTRVKYSAAN
Length571
PositionTail
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy0.010
Instability index51.02
Isoelectric point9.00
Molecular weight62712.83
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29513
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.66|      25|      26|      35|      59|       1
---------------------------------------------------------------------------
   18-   38 (31.10/17.70)	AAQAILEARRQ......PGGENTAAMD
   39-   63 (39.42/24.24)	AAREAFKQRRKLF..AVACDDADALVQ
   64-   86 (22.13/10.64)	SARQSIVSDPGRFvdVVTTPDED....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     223.44|      49|      84|     301|     349|       2
---------------------------------------------------------------------------
  160-  206 (43.89/28.01)	ALRL.....RVAPVRLLRIEssdrAPdkIVAVL..HLAAPLLEGKLCFDVITPA....
  219-  254 (45.31/29.19)	....IQ.IPCFEKATEITIR................LRGRLGIQLPPSGVFA.KLTAL
  301-  349 (80.65/58.47)	SLRLVQ.LSRLEGIRQLTIS....AP..ALTEL..DLYACLLWGMPMVDIFAPALETL
  386-  436 (53.59/36.05)	SLQLVQhFTEARDV.HLSLV....YP..SIMDMscELLVQAVKKLPAVEILSLRLLTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.32|      22|      26|     102|     127|       3
---------------------------------------------------------------------------
  104-  127 (31.82/24.59)	FGALPDEVLRHilLRLPSAAAAAR
  135-  156 (39.50/18.78)	WRNLWSTLLPK..LRFPGVTDLAR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29513 with Med32 domain of Kingdom Viridiplantae
Unable to open file!