<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29504

Description Uncharacterized protein
SequenceAVFASGRGFGRGGGGRGDGGGRGGGGRGFGRGGDSGGRGGRGGRGGRTPRGRGGGRGGGGRGGMKGGSKVVVVPHKHDGVFIAKAKEDALCTKNMVPGESVYGEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDNIWIAPGTRVLYLGGASGTTVSHVSDIVGPTGLVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPARYRMLVGMVDVIFSDVAQPDQARILALNASYFLKNGGHFVISIKANCIDSTMPAEAVFASEVEKLKADQFKPSEQVTLEPFERDHACVVGGYRMPKKQKGTS
Length308
PositionUnknown
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.356
Instability index31.57
Isoelectric point10.06
Molecular weight32311.32
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29504
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.28|      17|      19|      20|      38|       1
---------------------------------------------------------------------------
    6-   25 (36.86/10.64)	GRGFGRGG..GGRgdgGGRGGG
   26-   47 (31.90/12.28)	GRGFGRGGdsGGRggrGGRGGR
   51-   67 (29.52/ 7.18)	GRGGGRGG..GGR..gGMKGG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.38|      38|      57|     163|     206|       3
---------------------------------------------------------------------------
  163-  206 (56.52/55.71)	SDIVGP.TGLVYAVEFSH..RSGRDLVNMAKkrTNVIpiieDARHPA
  220-  260 (57.86/39.55)	SDVAQPdQARILALNASYflKNGGHFVISIK..ANCI....DSTMPA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29504 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VFASGRGFGRGGGGRGDGGGRGGGGRGFGRGGDSGGRGGRGGRGGRTPRGRGGGRGGGGRGGMKGGSKV
2
70










Molecular Recognition Features






MoRF SequenceStartStop




1) AVFASGRGFGRGGGGRGDGGGRGGGGRGFGRGGDSGGRGGRGGRGGRTPRGRGGGRGGGGRG
2) GYRMPKKQ
1
297
62
304