<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29499

Description Uncharacterized protein
SequenceMEGAAAAHPAASSVSAAAHWMATEDPGLRSNIINNMVKKFMTITNSQHDHHYREIQNYAVRCEQDALNRTTNKEDYLRNIAQRILNMEMKVRRSQSLQAGTTPSAQRPSSQQQNVCIMPQNPGQVPDQHRASAPNSQIEASQEQTVMVAAPDRYLNFNTTAISPVAMHVHPSQQPQSQQHQQQAKQLHPTNVVGYNPTSLNQIQGQSVSGQNFQQNPVLGQNASGSGTQQRQLAETPEQHQLLRMKQQHMRGNQQQNFTQRNQILPAQQAHLGKMQIGHPGVQNNQQNVGVLCQPMTPPQCQVATAQQSSLGCHSPQTSEPMVIAGEVDWREEIFQKIKSFKDAFLSEVLEYNRMVQVPKLTEEQLRSLPVENAEKLRCIRQVKKIIAMMLDLLNTQKSNVHKGMQNIFPIFQQYLGQLRLSISKSKARNTVAKTGCQSQNCSENSQIVNLAGNTAPFTCDASRQQKQQEQVTNAKTSRMEQTIMTRTPTPQQESHGCHLLGVPSPCFSPEALQPSSTNTVEECFTPFPVTKTVQPVKVASPHVASLSASVKSSVPKPGVARVVSPSASEKSRLASSPSRPEGAHAASPSSTSVESTLPTPIAKPGTVRAASPCTPVKSTSQSPVTKPGVAEVDSRRACVTSKLKSPVGKPETTGAASPCASVKSKVSLDVDSVTEFLQHRVVAPAAANGSSNQAIPSLVSAAPPKAAHQAEDQVHDEAEKIEAKRPISRLIETLLSSSPEALRHSANSMRLAIWEADRIPAPSPLPYRPRNGKMKRDFDHVTSRPVSSPLSSTDESCMTSECAAFEDESSGEYTAKRQKTQVNANDALVHEIKTINNKLVDTVISIADENGTDEIIYQNGGGTLIKLSYNAISLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDEQRRLSDISHAVAMAFGRAVGELPEPRSIEATAMAWDGCVRRAVTEVAHRHGGGTFSSRRNQWRAVQLHGPMVSL
Length989
PositionTail
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.04
Grand average of hydropathy-0.538
Instability index60.40
Isoelectric point8.98
Molecular weight107723.28
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29499
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     271.05|      45|      45|     594|     638|       1
---------------------------------------------------------------------------
  481-  520 (56.70/29.21)	.EQTI.MTRTPTP.QQESHGCHLLGV.....PSPCFSPEAL.QPSSTNT
  521-  568 (57.77/29.92)	VEECFtPFPVTKTvQPVKVASPHVASLSASvKSSVPKPGVA.RVVSPSA
  570-  592 (33.80/14.05)	EKSRL.............ASSPSRPEGAHA.ASP............SST
  594-  638 (79.80/44.51)	VESTL.PTPIAKP.GTVRAASPCTPVKSTS.QSPVTKPGVA.EVDSRRA
  640-  673 (42.97/20.12)	VTSKL.KSPVGKP.ETTGAASPCASVKSK..........VSlDVDS...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     142.06|      28|      29|     228|     255|       2
---------------------------------------------------------------------------
  173-  203 (40.43/17.63)	QQPQ..S..QQHQQ.............QAKQLHPTNvvgyNPTSLNQI
  204-  245 (35.64/14.68)	QGQS..VsgQNFQQnpvlgqnasgsgTQQRQLAETP....EQHQLLRM
  246-  275 (40.81/17.86)	KQQH..M..RGNQQ.........qnfTQRNQILPAQ....QAH.LGKM
  276-  311 (25.19/ 8.23)	QIGHpgV..QNNQQ..nvgvlcqpmtPPQCQVA.TA....QQSSL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.59|      22|      22|     744|     765|       3
---------------------------------------------------------------------------
  744-  765 (39.99/20.76)	RHSANSMRLAIWEADRIPAPSP
  769-  790 (37.61/19.15)	RPRNGKMKRDFDHVTSRPVSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.66|      31|     325|     111|     153|       5
---------------------------------------------------------------------------
  119-  151 (50.97/37.10)	PQNPGQVPDQHRASApnSQIEASQE.....QTVMVAAP
  705-  740 (43.69/15.01)	PKAAHQAEDQVHDEA..EKIEAKRPisrliETLLSSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.66|      22|      47|      24|      47|       6
---------------------------------------------------------------------------
   24-   47 (30.06/29.48)	EDpGLRsNIINNMVKKFMTITNSQ
   74-   95 (38.60/25.65)	ED.YLR.NIAQRILNMEMKVRRSQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29499 with Med15 domain of Kingdom Viridiplantae
Unable to open file!