<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>
Description
Uncharacterized protein Sequence MEAAAGAGGAIGGSGREAAAEEEDGGEQWLEEEAEAEAVYCAVGKEAVKEWKANLMWVLAAFPWRRRRSRIVLIHVHRPPSRVNMMGAWVPVSQLAEEEVNAYRQLEEERISKVLDDLLDICKSQKVNASKIIFSCDDIARGLLQLVDDHGITDLVMGAASDKAYSRKMRAPRSKKARKVQLKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTSTSPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQTREVDARAAELELQITSSERMMRDLEAKLSESYDLLHQLRRERRRDDVPAEAMAGSEAGDQRLTFLRLGLPELEEATNHFDESVRIGGGDGSRGSVYRGDLRSMAVAVKMIGRDVAVDEVGFCREVEAVGRARHPNLVTLVGACPEARAVVHEFVPGGSLEDRLAGAAPALPWHELCGVAHRACSALAFLHSTQPRATVHGDVRPANILLGEECCSSKLAGLGMRRLVRSSGGVALSRPAVGYVDPRHLATGEMTPERDVYALGVVLLRLVTGKPPLMAKQEAREAAGGSKAWHEVFDASSGGWPLEVAREVALVGLKCCDVEEEPAGARRPGELLEEACGVLEAAMSAAPGRSWSSVSSSSDGGEGGAPSYFVCPILKEVMRDPQIAGDGFSYEAEAIREWLRSGRDTSPMTNLKLPRRELVPNHPLRDAIHHWRLRRAMRTNFTTGLDSYYY Length 866 Position Tail Organism Oryza glaberrima (African rice) Kingdom Viridiplantae Lineage Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade>
Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity 0.05 Grand average of hydropathy -0.489 Instability index 58.69 Isoelectric point 5.46 Molecular weight 94975.42 Publications
Function
Annotated function
Functions as an E3 ubiquitin ligase.
ECO:0000256 ARBA:ARBA00003861
GO - Cellular Component GO - Biological Function ATP binding GO:0005524 IEA:InterPro
protein kinase activity GO:0004672 IEA:InterPro
ubiquitin-protein transferase activity GO:0004842 IEA:InterPro
GO - Biological Process
Interaction
Repeat regions
Repeats
>MDP29490
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 34.34| 9| 119| 577| 587| 1
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577- 587 (14.83/17.06) AGAAPAlpWHE
699- 707 (19.51/12.40) AGGSKA..WHE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
5| 346.06| 70| 70| 209| 278| 2
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161- 207 (32.82/13.13) ................SDkaYSRKMRAPR.....SKKARKVQLKASP...SC..KI..WFVCK......GNLIcTREvNEG....
209- 278 (114.97/64.97) NRTGSSTTSTSPRSSTSD..YSRSRSSPRV.HSLSSEQFGMQDPAEPTTSSV..DQ..TPIRE......DNAM.DRG.TEGFNHE
285- 349 (64.44/33.09) .......SSTVPVSENVE..AVQRSAAAVV.QSL..QEIEEDSPTPSGHGSE..DA..GDVSDaydkfkDAVI.E...AENLRHE
361- 422 (66.53/34.40) ERDLADATRIANEAESSQ..QREARHRKEVeERLARERAAMEQDRRELDDIL..EQ..T..RE......VDA...RA.AE.....
426- 491 (67.29/34.88) .....QITSSERMMRDLE..AKLSESYDLL.HQLRRERRRDDVPAEAMAGSEagDQrlTFLRL........GL.PEL.EEATNH.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 144.49| 33| 38| 613| 645| 3
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613- 645 (56.75/25.26) G...DVRPANILLGEECCSSKLAGLG..MRR...LVRSSGG
654- 685 (44.79/18.68) G...YVDPRHLATGEMTPERDVYALGvvLLR...LV...TG
715- 753 (42.95/17.67) GwplEVAREVALVGLKCCDVEEEPAG..ARRpgeLLEEACG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.29| 19| 20| 523| 541| 4
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523- 541 (32.06/14.88) IGRDVAVDEVGFCREVEAV
544- 562 (31.23/14.33) ARHPNLVTLVGACPEARAV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 129.46| 43| 782| 1| 51| 5
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1- 51 (60.17/54.59) MEAAAGAGgaiGGSGREAAAEEEDGGEQwleeEAEAEAVyCAVGKE.................AVKEW
755- 814 (69.28/39.08) LEAAMSAA...PGRSWSSVSSSSDGGEG....GAPSYFV.CPILKEvmrdpqiagdgfsyeaeAIREW
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Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.
Alignment of MDP29490 with Med32 domain of Kingdom Viridiplantae
Intrinsically Disordered Regions
IDR Sequence Start Stop
1) NEGLNRTGSSTTSTSPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQT 205 413
