<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29490

Description Uncharacterized protein
SequenceMEAAAGAGGAIGGSGREAAAEEEDGGEQWLEEEAEAEAVYCAVGKEAVKEWKANLMWVLAAFPWRRRRSRIVLIHVHRPPSRVNMMGAWVPVSQLAEEEVNAYRQLEEERISKVLDDLLDICKSQKVNASKIIFSCDDIARGLLQLVDDHGITDLVMGAASDKAYSRKMRAPRSKKARKVQLKASPSCKIWFVCKGNLICTREVNEGLNRTGSSTTSTSPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQTREVDARAAELELQITSSERMMRDLEAKLSESYDLLHQLRRERRRDDVPAEAMAGSEAGDQRLTFLRLGLPELEEATNHFDESVRIGGGDGSRGSVYRGDLRSMAVAVKMIGRDVAVDEVGFCREVEAVGRARHPNLVTLVGACPEARAVVHEFVPGGSLEDRLAGAAPALPWHELCGVAHRACSALAFLHSTQPRATVHGDVRPANILLGEECCSSKLAGLGMRRLVRSSGGVALSRPAVGYVDPRHLATGEMTPERDVYALGVVLLRLVTGKPPLMAKQEAREAAGGSKAWHEVFDASSGGWPLEVAREVALVGLKCCDVEEEPAGARRPGELLEEACGVLEAAMSAAPGRSWSSVSSSSDGGEGGAPSYFVCPILKEVMRDPQIAGDGFSYEAEAIREWLRSGRDTSPMTNLKLPRRELVPNHPLRDAIHHWRLRRAMRTNFTTGLDSYYY
Length866
PositionTail
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.05
Grand average of hydropathy-0.489
Instability index58.69
Isoelectric point5.46
Molecular weight94975.42
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



ECO:0000256	ARBA:ARBA00003861

GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29490
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.34|       9|     119|     577|     587|       1
---------------------------------------------------------------------------
  577-  587 (14.83/17.06)	AGAAPAlpWHE
  699-  707 (19.51/12.40)	AGGSKA..WHE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     346.06|      70|      70|     209|     278|       2
---------------------------------------------------------------------------
  161-  207 (32.82/13.13)	................SDkaYSRKMRAPR.....SKKARKVQLKASP...SC..KI..WFVCK......GNLIcTREvNEG....
  209-  278 (114.97/64.97)	NRTGSSTTSTSPRSSTSD..YSRSRSSPRV.HSLSSEQFGMQDPAEPTTSSV..DQ..TPIRE......DNAM.DRG.TEGFNHE
  285-  349 (64.44/33.09)	.......SSTVPVSENVE..AVQRSAAAVV.QSL..QEIEEDSPTPSGHGSE..DA..GDVSDaydkfkDAVI.E...AENLRHE
  361-  422 (66.53/34.40)	ERDLADATRIANEAESSQ..QREARHRKEVeERLARERAAMEQDRRELDDIL..EQ..T..RE......VDA...RA.AE.....
  426-  491 (67.29/34.88)	.....QITSSERMMRDLE..AKLSESYDLL.HQLRRERRRDDVPAEAMAGSEagDQrlTFLRL........GL.PEL.EEATNH.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.49|      33|      38|     613|     645|       3
---------------------------------------------------------------------------
  613-  645 (56.75/25.26)	G...DVRPANILLGEECCSSKLAGLG..MRR...LVRSSGG
  654-  685 (44.79/18.68)	G...YVDPRHLATGEMTPERDVYALGvvLLR...LV...TG
  715-  753 (42.95/17.67)	GwplEVAREVALVGLKCCDVEEEPAG..ARRpgeLLEEACG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.29|      19|      20|     523|     541|       4
---------------------------------------------------------------------------
  523-  541 (32.06/14.88)	IGRDVAVDEVGFCREVEAV
  544-  562 (31.23/14.33)	ARHPNLVTLVGACPEARAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.46|      43|     782|       1|      51|       5
---------------------------------------------------------------------------
    1-   51 (60.17/54.59)	MEAAAGAGgaiGGSGREAAAEEEDGGEQwleeEAEAEAVyCAVGKE.................AVKEW
  755-  814 (69.28/39.08)	LEAAMSAA...PGRSWSSVSSSSDGGEG....GAPSYFV.CPILKEvmrdpqiagdgfsyeaeAIREW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29490 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NEGLNRTGSSTTSTSPRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVDQTPIREDNAMDRGTEGFNHEAVAVASSSTVPVSENVEAVQRSAAAVVQSLQEIEEDSPTPSGHGSEDAGDVSDAYDKFKDAVIEAENLRHEAYEETRRRQKVERDLADATRIANEAESSQQREARHRKEVEERLARERAAMEQDRRELDDILEQT
205
413










Molecular Recognition Features






MoRF SequenceStartStop




NANANA