<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29488

Description Uncharacterized protein
SequenceMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHPARSSIADLFTLYLGMNSKQRVEDRTRETSNKLQKRVTAMNRDLPPRDEQFISDFEQLHMQFPDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNVVSSVEVPMGQGVSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIGANVSAIKGAEFSSPGQLGLTARGDQSRRGAEISYLHHLSCRIILAGLESDLKPATHAVIFQHMVNWLVNWDQRPHGVDQADALQLQTLRLERPLHEWMHLCLDVIWILVNEDKCRVPFYELVRSNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRQHPQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTSLDERAMGMFWVLSFTMAQPACEAVMNWFTSVGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQNVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCTSRSPEHWLKNQPPKRVELQKALGNHLSGKERYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFANLLFGLVNNVIPPLSCKSKSNPSDAAGSTARTTYNKPYTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLCVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPTSSGGGVEPVGANRPNTTASGINASNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNVVALLHSFFSNLPHEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNSSVYAATHPKLVQNPS
Length1620
PositionTail
OrganismOryza glaberrima (African rice)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.075
Instability index46.49
Isoelectric point6.89
Molecular weight181824.31
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29488
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.52|      16|      80|    1267|    1282|       1
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 1256- 1268 (16.37/ 7.46)	...AGSTARTTYNKPY
 1269- 1284 (26.70/17.42)	TSSAGGISNSDGQRAF
 1351- 1365 (22.45/13.33)	TSSGGGVEPVGANRP.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     230.65|      77|     183|      10|      93|       2
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   10-   93 (118.28/88.75)	PMSPaISASAVLPQQRQMQLhhhhHHPARSSIADL....FTL..YLGMNSKQRVEDRTRETS..NKLQKRV..TAMNRDLPPRDEQFIsdFEQL
  193-  279 (112.38/65.46)	PTSP.LSAMNTIGSPTQSGI....DQPIGANVSAIkgaeFSSpgQLGLTARGDQSRRGAEISylHHLSCRIilAGLESDLKPATHAVI..FQHM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.70|      38|     183|     861|     916|       3
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  868-  907 (59.97/72.78)	ITIISLAITMKTRGIAEVEHIIYLQPLLeqIMATSQHTWS
 1303- 1340 (63.73/31.89)	IEILSLCVPASQIVSSLVQIIAHVQAML..IQSNSGHGMS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.49|      23|     182|    1382|    1411|       4
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 1387- 1411 (35.70/42.02)	QLSVLMIqaCGLLLAQLPPEFHTLL
 1574- 1596 (39.79/22.20)	KLEILTL..CGKVMEILRPDVQHLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.50|      25|     182|     290|     346|       5
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  291-  315 (46.51/66.40)	HGVDQADALQLQTLRLERPLHEWMH
  421-  445 (46.99/10.39)	HGEDLANSIPKGGLDWERALRCLRH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     196.19|      68|     276|     475|     571|       7
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  475-  558 (89.87/99.69)	TPGAVFSPDMigEAVADRTIELLRLTNSEtqcwqdwLLFADIFFFLM........KSGCIDFlDfVDKLASRVtnsdqQILRSNHVTWLLAQ
  760-  835 (106.32/87.93)	TPHSLFRPHF..TTLTQRSPSILSKSGVS.......LLLLEILNYRLlplyryhgKSKALMY.D.VTKIISMI.....KVKRGEHRLFRLAE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      15|     388|     400|       8
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  388-  400 (24.35/13.53)	RFLSQSYPSIAGE
  406-  418 (25.28/14.33)	RYSPITYPSVLGE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.63|      16|      18|     570|     585|       9
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  570-  585 (26.29/22.24)	SSDPRKVETTRKIISF
  591-  606 (27.34/23.55)	SLDPNNISPQSILLDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.09|      15|      15|    1211|    1225|      10
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 1211- 1225 (28.13/18.47)	FAQYLASSNSSICPP
 1229- 1243 (26.97/17.37)	FANLLFGLVNNVIPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     114.15|      28|     393|     612|     639|      13
---------------------------------------------------------------------------
  612-  639 (48.53/29.92)	TLRIWSFNTSIREHLNSDQLQKGKQIDE
 1007- 1033 (45.90/27.89)	TANIYTMVDVLLHHIQLE.LQRGHQIQD
 1043- 1057 (19.72/ 7.75)	AFFIWT.....HELLPLDIL........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.83|      10|      15|     665|     674|      16
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  665-  674 (20.12/12.66)	MFWVLSFTMA
  682-  691 (19.71/12.23)	MNWFTSVGVA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.44|      46|     844|     114|     159|      20
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  114-  159 (82.91/54.20)	FVLQCSSHA.PQSEFLLFATRCLCARGHLRWDSL.LPSLLNVVSSVEV
  959- 1006 (76.53/49.40)	YVMTYLSHSfPQHRQYLCAGAWMLMNGHLEINSAnLARVLREFSPEEV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29488 with Med23 domain of Kingdom Viridiplantae
Unable to open file!