<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29474

Description Uncharacterized protein
SequenceMGEVFQNMSEEEEEEEGSVMDGVMEVTKWAQEKKTDPLIWSIQVSSALNSGGVSLPSVELAQRLVSHICFENHVPITWKFLEKAMSVRLLPPLLVLSLLSARVVPQRRLHPSAYALYMDLLSRHAFSPHIHFPNYLKVMASIHHSLSLPPSNHHPHPGVVLVHFLFSIVSQLLQSSLDDQGFLQHSPDPYNNNDALHRKNTAMAIEIIARFLHHKLTSRILALVQRNMPAHWGPFLHQLQQLAANSTVLRSLKHVTPESLLPLDFNSTTGNGIKLLSSDWKTTPTLELNAVMADSCAVQSRHDSWSLLWLPIDLILEDAMDGNHVAEASAVEALTGLVKALQAVNGTAWHSAFLGLWIAALRLVQRERDPGEGPVPRLDTCLSMLLCITTLVVANLIEEEEGKLIEEAERSPANQRMDKQALGERHGALVTSLQLLGDYENLLTPPQSVIWGANQAAAKATLFVSGHSGYLEHTNVNDLPTNCSGNLRHLIVEACIARHLLDTSAYFWHGYVSTPFNQLPHSIPNHLPSWSSLMKGSPLTPPLVNVLVATPASSLAEIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQEHIVFFIINMLSPPVPPKYSGTESYLISHAPFLNVFLVGISSVDSVQIFSLHGVVPLLAAVLMPICEAFGSSVPNVSWTAVTGEKLTCHAVFSNAFILLLRLWRFDRPPVEHVMGGAATPALGSQLGPEYLLLVRNCMLAAFGKSPRDRVRSRRFSKMIRFSLEPLFMDSFPKLNIWYRQHQECIASICNTLAPGGPVSQIVEALLTMMCKKINRSAQSLTPTTSGSSNSSLPSLDDALMKLKVPAWDILEATPFVLDAALTACAHGSLSPRELATGLKDLADFLPATLGTIVSYLSSEVTRCIWKPAFMNGTDWPSPAANLSIVEQQIKKILAATGVDVPSLAIDGNAPATLPLPLAALLSLTITYKLDKSCERFVILAGPSLIALSSGCPWPCMPIVGALWAQKVKRWSDFFVFSASATVFHHSRDAVVQLLRSCFASTLGLGSACIYNNGGVGTLLGHGFGSHYSGGFTPVAPGFLYLRVYRSIRDVMFLTDEIVSLLMLSVRDIANGGLPKGEVEKLKKTKYGIRYGQVSLAASMTRVKHAALLGASILWISGGSGLVQSLITETLPSWFLSAQGLEQEGGESGVVVAMLRGYALACFAVLGGTFAWGIDSLSPASKRRPKVLEIHLEFLANALDRKISLRCDCATWRAYVSGVMSLMVSCTPLWIQELDVGILKRMSSGLRQLNEEDLALRLLEIRGTSVMGEAAEMICQTRL
Length1310
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy0.191
Instability index47.97
Isoelectric point6.57
Molecular weight142975.06
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29474
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     663.54|     296|     389|       4|     319|       1
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    4-  220 (270.68/211.68)	..................................................................................................................................................................................VFQNMSEEEEE...EEGSVMDGVMEVTKWAQEKKTDPLIWSIQVSSALNSgGVSLPS..VELAQRLVSHICFenHVPITWKFLEKAmSVRLLPPLL...VLSLLSARVVPQRRLHPSAYaLYMDLLSRhAFS..PHiHFPNYLKVMASIHHSLSLPPsnhhPHPGVVLVHFLFSI..VSQLLQSSLDDQGFLQHSPDPYNNNDALHRKNTAMaiEIIARFLHHKLTSRI
  221-  319 (53.04/46.41)	LALVQRNMPAHwGPFLHQ.LQQLAA.NSTVLRSLKHVTP...ESLLPLdfNSTTGNGIKLLSsdWK..TTPTLELNAVMADSCAVQSRhdSWSLLWLPIDLILEDA.............................................................................................................................................................................................................................................................................................................
  392-  607 (282.17/177.56)	..........................................................................................................mdgnhvaeasavealtglvkalqavngtawhsaflglwiaalrlvqrerdpgegpvprldtclsmllcittlVVANLIEEEEGkliEEAERSPANQRMDKQALGERHGALVTSLQLLGDYEN.LLTPPQsvIWGANQAAAKATL..FVSGHSGYLEHT.NVNDLPTNCsgnLRHLIVEACIARHLLDTSAY.FWHGYVST.PFNqlPH.SIPNHLPSWSSLMKGSPLTP....PLVNVLVATPASSLaeIEKIFEFAINGSDEEKISAATILCGASLVRGWNVQ..EHIVFFIINMLSPPV
  611-  709 (57.65/26.06)	YSGTESYLISH.APFLNVfLVGISSvDSVQIFSLHGVVPllaAVLMPI..CEAFGSSVPNVS..WTavTGEKLTCHAVFSNAFILLLR..LWRFDRPPVEHVMGGA.............................................................................................................................................................................................................................................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     314.19|     117|     359|     723|     846|       2
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  723-  846 (186.57/132.50)	LLL.VRNcmLAAFGKSPRDRVRSRRFSKMIRFSLEPLFMD..SFP....KLNIWYRQHQECIASIcnTLAPGGpvSQIVEALLTMMCKKINRSAQSLtPTTSGSSNSSLPSLDD.ALMKLKV....PAWDILEATP
  866-  926 (49.20/22.15)	LATgLKD..LADFLPATLGTIVSYLSSEVTRCIWKPAFMNgtDWPspaaNLSIVEQQIKKILA.........................................................................
 1142- 1210 (78.42/41.38)	..............................................................ASI..LWISGG..SGLVQSLITETLPSWFLSAQGL.EQEGGESGVVVAMLRGyALACFAVlggtFAWGIDSLSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29474 with Med33 domain of Kingdom Viridiplantae
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