Description | Uncharacterized protein |
Sequence | MANNSQPSSMQFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTPRPMQPGHPVPSSQAIPMQYIQTNRPLTSIPTHSQQTVPPFSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFASPAGQSWPSSASQSVAAVTSVQSAGVQSSGAASTDTVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSEGRKYYYNKVTQQSTWSIPEELKLAREQAQKAANQGMQSETNDTSNAAVSSTATPTPTPTAVNAASLNTSLTSNHSNGLASSPSSVTPIAATDSQQSVSGLSGSSVSHSIVTPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQSKMPPLVENQASQDFASVNGSSLQDIEEAKRSLPVVGKNNVVPPEEKTNDDETLVYANKLEAKLAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERLRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKANSHWRKIQDRLEDDDRYLRLEKIDCLLVFQDYIRDLEKEEEEQKRIQKDQIRRGERKNRDAFRKLLEEHVAAGILTAKTQWHEYCLKVRDLPQYQAVASNTSGSTPKDLFEDAAEDLEKQYHEDKTLIKDTIKSGKITVVTTSVFEEFKVAVLEEAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITASSKWEDCKSLFEEAQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKEKDREREKDKSKERHRKDETDSDNQDMTDGHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKQADSPESDNENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN |
Length | 1008 |
Position | Unknown |
Organism | Glycine max (Soybean) (Glycine hispida) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja. |
Aromaticity | 0.06 |
Grand average of hydropathy | -1.111 |
Instability index | 56.26 |
Isoelectric point | 6.00 |
Molecular weight | 115122.00 |
Publications | PubMed=20075913 |
Annotated function |
|
GO - Cellular Component | U1 snRNP GO:0005685 IBA:GO_Central U2-type prespliceosome GO:0071004 IBA:GO_Central |
GO - Biological Function | RNA binding GO:0003723 IBA:GO_Central |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro mRNA splicing, via spliceosome GO:0000398 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP29469 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 240.62| 38| 38| 850| 887| 1 --------------------------------------------------------------------------- 549- 609 (33.89/14.12) DERF..NAVE.............RLRDREDlfesymvELERKEKENAaEEH..RRniaeyrkflescdyvKANSHWRK 612- 664 (37.68/16.58) DRLE..DDDRylrlekidcllvfQDYIRDL.......EKEEEEQKRI.QKDqiRR...............GERKNRDA 850- 883 (44.13/20.76) ......KAKE.............KERKREE.......EKAKKEKERE.EKE..KR...............KEKEKKEK 884- 922 (50.92/25.16) DRER.eKDKS.............KERHRKD.......ETDSDNQDMT.DGH..GY...............KEEKKKEK 923- 960 (38.02/16.80) DKERkhRKRH.............QSSIDDV.......DSEKEEKEES.KKS..RR...............HGSERK.. 961- 987 (35.99/15.48) .......................KSRKQAD.......S...PESDNE.NRH..RR...............HKREHWDG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 139.17| 36| 38| 198| 234| 2 --------------------------------------------------------------------------- 198- 234 (68.74/43.65) WQEHTSaDGRRYYYNKRTRQSSWEKPLELMSPIERAD 239- 274 (70.43/40.78) WKEFTS.EGRKYYYNKVTQQSTWSIPEELKLAREQAQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 176.01| 28| 30| 7| 34| 3 --------------------------------------------------------------------------- 7- 34 (57.01/37.78) PSSMQFRP...............VIQAQQ.......GQPF..VPMNSQQF.G..P 40- 65 (51.72/33.55) PSSNAGMP...............VIQGQQ.......LQYS..QPM..QQL.T..P 75- 103 (37.49/22.18) PSS.QAIP...............MQYIQT.......NRPLtsIPTHSQQ...tvP 104- 151 (29.78/16.01) PFS.NHMPglavsvaaphssyftLSYGQQqdnanalAQYQ..HP..PQMFaS..P --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 142.81| 28| 28| 283| 310| 4 --------------------------------------------------------------------------- 168- 194 (30.90/17.21) ..TSVQSAGVQS.SGAASTDT...VTnATNQQS 283- 310 (46.42/29.70) SETNDTSNAAVS.STATPTPT...PT.AVNAAS 314- 341 (43.68/27.50) SLTSNHSNGLAS.SPSSVTPI...AA.TDSQQS 343- 371 (21.80/ 9.89) ...SGLSGSSVShSIVTPSTTgvePS.TVVTTS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 44.68| 10| 38| 451| 460| 5 --------------------------------------------------------------------------- 451- 460 (14.97/ 8.01) EAKLAFKALL 482- 491 (13.35/ 6.28) KRYNALKTLG 492- 501 (16.35/ 9.47) ERKQAFNEYL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 33.49| 10| 17| 818| 827| 6 --------------------------------------------------------------------------- 818- 827 (19.05/10.52) KSLFEEAQEY 837- 846 (14.44/ 6.20) REIFEEYITY --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 26.92| 9| 24| 747| 759| 8 --------------------------------------------------------------------------- 747- 759 (10.87/12.57) VFEEFkvavLEEA 772- 780 (16.05/ 7.28) IFEEL....LERA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 108.04| 32| 273| 508| 539| 10 --------------------------------------------------------------------------- 508- 539 (57.42/34.41) EAEERRMKQK.RAREEFTKMLEECKELTSSMRW 782- 814 (50.62/29.51) EKEEKEAKKRqRLADDFTNLLYTFKDITASSKW --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ENRHRRHKREHWDGSRKTGGHEELEDGELGDDVEN 2) KRHQSSIDDVDSE | 974 930 | 1008 942 |
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