<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29460

Description Uncharacterized protein
SequenceMDNNNWRPNQGTEANMDTSDWRGGLPHESRQRIVNKIMDTLKRHLPVSVQEGLHELQKIAQRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGSMAPNLPPNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMSNQTPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNVQNIPGQNSVGSTIGQNANMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQYIYQQQMQQQLIRQKLQQQQQQQQQQQNLLQSNQLQSSQQPSIQTSTVMQQPSMMQTSLPSIQHNQQSNNQQQSTQSVLQQHSQVIRQQQPQQTSIIHQQQTPMTQQSILPPQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQPGNSGMQTSQHSAHVLQQSQVPIQQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDMQQRLQASGPLLQQSNVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEVYQKIKSMKESYLPELNEMYQKIASKLQQHDSLPQQPKSDQLEKLKVFKMMLERIITFLQVSKSNISPNFKEKLNSYEKQIINFINTNRPRKNMPGHLPSPHMHSMSQSQPQVTQVQSHENQMNSQLQTTNMQGSVATMQQNNMAAMQHNSLSGVSTAQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQLTNVNSLSSQAGVNVVQPNHNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQYQRQLIQRKQQQILQQQQQQQQLHQTAKQQLPAQLPTHQIQQLHQMNDANDIKMRQGISVKPGVFQQPLTSSQRSTYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPISGVSSISNAANIGYQLTGGAAAPAQSLAIGTPGISASPLLAEFTGPDGAHGNALAPTSGKSTVTEQPIERLIKAVKSMSPKALSSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVVSSPGSMNDSIKQLTAEASDLDSTATSRFKMPRIEANHSLLEEIREVNQRLIDTVVDISNEEVDPTAAAAAAEGTEGTIVKCSYNAVALGPSLKSQYASAQMSPIQPLHLLVPTNYPNCSPILLDKFPVESSKENEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARIVISEHAQQSGGGSFSSKYGTWENCLTT
Length1313
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.03
Grand average of hydropathy-0.810
Instability index71.75
Isoelectric point9.34
Molecular weight144743.12
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29460
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.16|      15|      15|      98|     112|       8
---------------------------------------------------------------------------
   98-  112 (31.66/11.02)	PNL..PPNQGGPSNKPP
  114-  130 (24.50/ 6.66)	PGLgiPPQVHNPGQQHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.59|      30|      30|     461|     490|      10
---------------------------------------------------------------------------
  306-  340 (36.63/ 6.33)	HSQVIRQQQPQQtsiihQQQT.PMTQQSILPPQQQQ
  457-  478 (37.47/ 6.68)	.SQ.....V..Q.....QSQP.QAPQQQLMPQIQSQ
  479-  506 (37.49/ 6.69)	PAQLQQQLGLQQ.....QPNPlQRDMQQ...RLQAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.85|      24|      30|     704|     733|      12
---------------------------------------------------------------------------
  263-  286 (34.71/ 6.67)	QQ...PSIQTSTVMQQPSMMQ.TSL.....PSI
  713-  745 (23.14/ 7.90)	QQskmNSMQPSTNLDSGPGNAvNSLqqvpvSSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     164.51|      30|      30|     517|     546|      13
---------------------------------------------------------------------------
  517-  546 (48.22/19.76)	DQQKQLYQSQRPLPETSSTSL..............DSTAQTGQS
  550-  593 (37.92/13.92)	DWQEEVYQKIKSMKESYLPELnemyqkiasklqqhDSLPQQPKS
  594-  618 (35.27/12.42)	DQLEKL.KVFKMMLERIITFL..................QVSKS
  633-  661 (43.10/16.85)	KQIINFINTNRP.RKNMPGHL..............PSPHMHSMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.27|      13|      69|     342|     354|      16
---------------------------------------------------------------------------
  342-  354 (23.34/ 7.14)	QQLMGAQANAPNM
  373-  385 (22.31/ 6.41)	QRLLTQQNNLSNL
  388-  400 (24.62/ 8.04)	QQLINQQNNLSNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     124.52|      25|      26|     976|    1000|      17
---------------------------------------------------------------------------
  925-  948 (21.73/ 8.95)	.LT.KVATPLQSanspFV..VPTP....SPPL
  952-  973 (27.09/13.23)	PMPGDSEKPIS..........GVSSISnAANI
  976- 1000 (42.23/25.32)	QLTGGAAAPAQS....LA..IGTPGIS.ASPL
 1003- 1029 (33.47/18.32)	EFTGPDGAHGNA....LAptSGKSTVT.EQPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.70|      27|     114|    1131|    1158|      18
---------------------------------------------------------------------------
 1131- 1158 (42.03/30.00)	EASDLDSTATSRFKMP..RIEANHSLlEEI
 1248- 1276 (40.66/24.31)	ENEDLSVKAKSRFSISlrSLSQPMSL.GEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.70|      15|      15|    1033|    1047|      19
---------------------------------------------------------------------------
 1033- 1047 (24.36/15.05)	IKAVKSMSPKALSSA
 1051- 1065 (25.34/15.95)	IGSVVSMNDRIAGSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.31|      32|     581|     181|     214|      20
---------------------------------------------------------------------------
  181-  214 (51.81/22.81)	NSVGSTIGQN...ANMQNMFPGS...QRQiQGRQQvVPQQ
  759-  796 (49.50/15.93)	NSLSSQAGVNvvqPNHNPLQPGSsmlQHQ.QLKQQ.QEQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29460 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IINFINTNRPRKNMPGHLPSPHMHSMSQSQPQVTQVQSHENQMNSQLQTTNMQGSVATMQQNNMAAMQHNSLSGVSTAQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQLTNVNSLSSQAGVNVVQPNHNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQY
2) MDNNNWRPNQGTEANMDTSDWRGGLPHESRQRIVNKIMDTLKRHLPVSVQEGLHEL
3) NFITQDGANGTRRMKRYTNATPLNVVSSPGSM
4) NVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEV
5) QQPQQTSIIHQQQTPMTQQSILPPQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQPGNSGMQTSQHSAHVLQQSQVPIQQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDMQQRLQASGPLLQ
6) QQQQQQNLLQSNQLQSSQQPSIQTSTVMQQPSMMQTSLPSIQHNQQSNNQQQSTQSVLQQHSQV
7) RKISLKMLTMETKSQGSMAPNLPPNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMSNQTPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNVQNIPGQNSVGSTIGQNANMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQ
8) RKQQQILQQQQQQQQLHQTAKQQLPAQLPTHQIQQLHQMNDANDIKMRQGISVKPGVFQQPLTSSQRSTYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPISGVS
635
1
1090
514
313
246
79
814
807
56
1121
555
511
309
224
965










Molecular Recognition Features






MoRF SequenceStartStop




NANANA