<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29459

Description Uncharacterized protein
SequenceMDNNNWRPNQGTEANMDTSDWRGGLPHESRQRIVNKIMDTLKRHLPVSVQEGLHELQKIAQRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGSMAPNLPPNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMSNQTPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNVQNIPGQNSVGSTIGQNANMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQYIYQQQMQQQLIRQKLQQQQQQQQQQQNLLQSNQLQSSQQPSIQTSTVMQQPSMMQTSLPSIQHNQQSNNQQQSTQSVLQQHSQVIRQQQPQQTSIIHQQQTPMTQQSILPPQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQPGNSGMQTSQHSAHVLQQSQVPIQQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDMQQRLQASGPLLQQSNVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEVYQKIKSMKESYLPELNEMYQKIASKLQQHDSLPQQPKSDQLEKLKVFKMMLERIITFLQVSKSNISPNFKEKLNSYEKQIINFINTNRPRKNMPGHLPSPHMHSMSQSQPQVTQVQSHENQMNSQLQTTNMQGSVATMQQNNMAAMQHNSLSGVSTAQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQLTNVNSLSSQAGVNVVQPNHNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQYQRQLIQRKQQQILQQQQQQQQLHQTAKQQLPAQLPTHQIQQLHQMNDANDIKMRQGISVKPGVFQQPLTSSQRSTYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPISGVSSISNAANIGYQLTGGAAAPAQSLAIGTPGISASPLLAEFTGPDGAHGNALAPTSGKSTVTEQPIERLIKAVKSMSPKALSSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVVSSPGSMNDSIKQLTAEASDLDSTATSRFKMPRIERLYMKMHCRWGKGKEITQQTRIQVGQGERNKHVANHSLLEEIREVNQRLIDTVVDISNEEVDPTAAAAAAEGTEGTIVKCSYNAVALGPSLKSQYASAQMSPIQPLHLLVPTNYPNCSPILLDKFPVESSKENEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARIVISEHAQQSGGGSFSSKYGTWENCLTT
Length1346
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.03
Grand average of hydropathy-0.821
Instability index71.71
Isoelectric point9.49
Molecular weight148722.75
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29459
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     692.28|      79|      96|     372|     465|       7
---------------------------------------------------------------------------
  163-  266 (62.34/11.45)	P.IQNVGQ.NNpNVQNIPG.Q.................NsvgsTIG....QN..ANM...Q.NM..F........PG..S..Q............................RQIQG.R.Q.....................QVvpQQ....QqqqsqnsqqyiyqqqmqqqlirqklqqqqqQQ....Q....................QQQNLLQSnQLQSSQqPS
  276-  358 (52.41/ 8.18)	P.SMM....QT.SLPSIQHnQqsnnqqqstqsvlqqhsQ....VIR....QQqpQQT...S.II..HQQ...QT.PM..T..Q............................QSILP.PqQQQ.......................QQ....Q...........................lmgAQ....A....................NAPNMHHT.Q........
  372-  465 (140.66/37.25)	P.QRLLTQ.QN.NLSNLQQ.Q.................Q....LIN....QQ..NNL...S.NM..HQQLGNNV.PG..L..Q................P...........QQVLG.P.QPGNSGMqtsqhsahvlqqsqvPI..QQ....Q..............................SQ....Q....................NASNLLPS.QVQQSQ.PQ
  467-  547 (69.57/13.83)	PqQQLMPQiQS.QPAQLQQ.Q.................L....GLQ....QQ.pNPL...QrDM..QQRLQASG.PL..L..Q................Q...........SNVLD.............................QQkqlyQ..............................SQrplpE....................TSSTSLDS.TAQTGQ.SS
  551-  623 (49.18/ 7.12)	W.QEEVYQ.K...IKSMKE.S.................Y....L..........PEL...N.EM..YQKIASK......L..Q................Q...........HDSLP.Q.QP..............................K..............................SD....QleklkvfkmmleriitflqvSKSNISPN..........
  625-  687 (71.73/14.54)	.........KE.KL.NSYE.K.................Q....IIN.finTN..RPR...K.NM..PGHL.....PS..P..H................M...........HSMSQ.S.QPQVTQV.........................Q..............................SH....E....................NQMN...S.QLQTTN.MQ
  689-  748 (70.78/14.23)	S.VATM.Q.QN.NMAAM.................................QH..NSL...S.GV..STAQQSKM.NS..M..Q................P...........STNLD.S.GPGNA......................................................................................VNSLQQV.PVSSLQ.QN
  753-  847 (74.05/15.31)	P.Q..LTN.VN.SLSS....Q.................A....GVNvvqpNH..NPLqpgS.SMlqHQQLKQQQ.EQqmL..QnqqlkqqyqrqliqrkQ...........QQILQ.Q.Q...QQ....................QQ....Q..............................LH....Q....................TAKQQLPA.QLPTHQ.IQ
  849-  915 (49.26/ 7.14)	.....LHQ....................................MN....DA..NDI.....KM..RQ..GISVkPG..VfqQ................PltssqrstyphQQMKGsP.FPVSSP..........................Q..............................LL....Q....................ATSPQIP....QHSS.PQ
  916-  972 (52.33/ 8.15)	.....VDQ.QN.HLPSLTK.V.................A....TPL....QS..ANS...P.FV.........V.PT..P..S................P...........PLAPS.P.MPGDSEK...............PI..SG...vS..............................SI....S....................NAAN..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.69|      15|      21|      56|      74|       8
---------------------------------------------------------------------------
   56-   74 (19.93/25.02)	LQKIAQrfeeKIFTAAT.SQ
   78-   93 (21.75/13.92)	LRKISL....KMLTMETkSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.51|      15|      16|      98|     112|       9
---------------------------------------------------------------------------
   98-  112 (32.28/10.85)	PNL..PPNQGGPSNKPP
  114-  130 (26.23/ 7.38)	PGLgiPPQVHNPGQQHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.24|      13|     148|    1131|    1143|      10
---------------------------------------------------------------------------
 1131- 1143 (22.63/18.81)	EASDLDSTATSRF
 1281- 1293 (22.61/18.77)	ENEDLSVKAKSRF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.00|      25|      26|     976|    1000|      11
---------------------------------------------------------------------------
  976- 1000 (41.97/23.73)	QLTGGAAAPAQSLA..IGTPGISASPL
 1003- 1029 (39.03/21.53)	EFTGPDGAHGNALAptSGKSTVTEQPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.71|      18|      21|    1038|    1057|      12
---------------------------------------------------------------------------
 1038- 1057 (24.97/19.47)	SMSPKALSSAVsdIG.SVVSM
 1063- 1081 (26.74/14.13)	GSAPGNGSRAA..VGeDLVAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.62|       9|      21|      16|      26|      13
---------------------------------------------------------------------------
   16-   26 (15.41/17.53)	MDTsdWRGGLP
   38-   46 (18.20/11.46)	MDT..LKRHLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29459 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IINFINTNRPRKNMPGHLPSPHMHSMSQSQPQVTQVQSHENQMNSQLQTTNMQGSVATMQQNNMAAMQHNSLSGVSTAQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQLTNVNSLSSQAGVNVVQPNHNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQY
2) MDNNNWRPNQGTEANMDTSDWRGGLPHESRQRIVNKIMDTLKRHLPVSVQEGLHEL
3) NFITQDGANGTRRMKRYTNATPLNVVSSPGSMNDSIKQLTAEAS
4) NVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEV
5) QQPQQTSIIHQQQTPMTQQSILPPQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQPGNSGMQTSQHSAHVLQQSQVPIQQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDMQQRLQASGPLLQ
6) QQQQQQNLLQSNQLQSSQQPSIQTSTVMQQPSMMQTSLPSIQHNQQSNNQQQSTQSVLQQHSQV
7) RKISLKMLTMETKSQGSMAPNLPPNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMSNQTPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNVQNIPGQNSVGSTIGQNANMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQ
8) RKQQQILQQQQQQQQLHQTAKQQLPAQLPTHQIQQLHQMNDANDIKMRQGISVKPGVFQQPLTSSQRSTYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKPISGVS
635
1
1090
514
313
246
79
814
807
56
1133
555
511
309
224
965










Molecular Recognition Features






MoRF SequenceStartStop




NANANA