<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29456

Description Uncharacterized protein
SequenceMEGGEGGEGLNQAVQQQLNLKQVKTRAISLFKAISRILEDFEAYGRTNSTPKWQDILGQYSMVNLELFNIVDDIKKVSKAFLVHPKNVNADNATILPVMLSSKLLPEMETDDTAKRDQLLLGMQNLPIPTQIEKLKARLDLISAACEGAEKVLADTRKAYCFGTRQGPAAIAPATLDKGQAAKIQEQENLLRSAVNAGDGLRIPGDQRHITPAQPPLHLADALPVVIANDPTTAQPQPQLSANTMGMPAQNSLLQASSATVSQLLGRSAASPSAATTTTTSFDNITASPIPYANSPRSSTNIMNSPSPQQQQTQQQPPVLQQQQQRQKFMQLPQQQQQHQILAQQQQFRQSAMQGLGQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTRLSQFSGPANSALFSAAQTTPNTQMIPNISGTLPSQSLLPRVQLGLSGNNPQRSHPSQMLSDQVFNMGGGNPGGMMPIQQQQQQQQQQQHGSQAFGSMANAQNLQSGLVTLQNTQQNHPNFSQQRQQNPQ
Length532
PositionHead
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.04
Grand average of hydropathy-0.622
Instability index58.14
Isoelectric point9.32
Molecular weight57886.35
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29456
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.27|      23|      23|     322|     344|       1
---------------------------------------------------------------------------
  323-  344 (39.94/14.13)	QQQ.RQKFMQ.LPQQQQQHQI.....L.....aQ
  345-  374 (27.03/ 7.01)	QQQfRQSAMQgLGQLHGQHQMqfsqpLGH....Q
  375-  397 (27.30/ 7.16)	QFQ.GR...Q.LPSGHVQHGI......GQsqlnQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.59|      17|      18|     272|     289|       2
---------------------------------------------------------------------------
  248-  272 (19.74/ 8.42)	PaqnsllqaSSATVSQL.LGRSAASP
  273-  289 (18.97/12.51)	.........SAATTTTTsFDNITASP
  293-  306 (23.88/11.63)	A........NSPRSST....NIMNSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.06|      17|      18|     436|     453|       4
---------------------------------------------------------------------------
  436-  453 (27.56/17.97)	PSQSLLPRVqLGLSGNNP
  458-  474 (32.51/16.77)	PSQMLSDQV.FNMGGGNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.77|      40|      48|     131|     173|       5
---------------------------------------------------------------------------
  131-  173 (59.87/54.51)	QIEKLKARLDLISAACEGAE..KVLADTRKaycFGTRQGPAAIA...P
  180-  224 (58.90/42.82)	QAAKIQEQENLLRSAVNAGDglRIPGDQRH...ITPAQPPLHLAdalP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.12|      21|      25|     475|     499|       6
---------------------------------------------------------------------------
  475-  495 (40.57/17.99)	GGMMPIQQQQQQQ....QQQQHGSQ
  508-  532 (32.55/ 6.88)	SGLVTLQNTQQNHpnfsQQRQQNPQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29456 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRIPGDQRHITPAQPPLHLADALPVVIANDPTTAQPQPQLSANTMGMPAQNSLLQASSATVSQLLGRSAASPSAATTTTTSFDNITASPIPYANSPRSSTNIMNSPSPQQQQTQQQPPVLQQQQQRQKFMQLPQQQQQHQILAQQQQFRQSAMQGLGQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTRLSQFSGPANSALFSAAQTTPNTQMIPNISGTLPSQSLLPRVQLGLSGNNPQRSHPSQMLSDQVFNMGGGNPGGMMPIQQQQQQQQQQQHGSQAFGSMANAQNLQSGLVTLQNTQQNHPNFSQQRQQNPQ
201
532










Molecular Recognition Features






MoRF SequenceStartStop




NANANA