<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29455

Description Uncharacterized protein
SequenceMDNNNWRPNQGTEANMDTSDWRGGLHHESRQRIVNKIMDTLKRHLPVTGQEGLHELQKIAQRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGSMAPNLPTNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMPNQPPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNMQNIPGQNSVGSTISQNSNMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQYIYQQQMQHQLLRQKLQQQQQQQQQQQQQQQQQQQQQQQNLLQSNQLQSSQQPAIQTSTVMQQPSMMQASLPSIQHNQQSNNQQSTQSVLQQHSQVIRQQQHQQTSIIHQQQTPMTQQSILPTQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQSGNSGMQTSQHSAHVLQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDVQQRLQASGPLLQQSNVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEEVYQKIKSMKESYLPELNEMYQKIVSKLQQHDSLPQQPKSDQLEKLKVFKMMLERIITFLQVSKSNISPNFKEKLNSYEKQIINFINTNRPRKNMPGHLLPPHMHSMPQSQPQVTQVQSHENQMNPQLQTTNMQGSVATMQQNNMAGMQHNSLSGVSTVQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQQTNVNSLSSQAGVNVVQPNLNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQYQRQLLQRKQQQMLQQQQQQQQQQQQQQQQLHQTSKQQLPAQLPTHQIQQLHQMNDANDIKMRQGIGVKPGVFQQHLTSSQRSAYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKLISGVSSISNAANIGYQQTGGAAAPGQSLAIGTPGISASPLLAEFTGPDGAHGNSLAPTSGKSTVTEQPIERLIKAVKSMSPKALSSAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVVTSAGSMNDSIKQLAAEASDLDSTATSRFKMPRIEANHSLLEEIREVNQRLIDTVVDISNEEVDPTAAAAAAEGTEGTIVKCSYNAVALSPSLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVESSKENEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEHAQQSGGGSFSSKYGTWENCLTT
Length1324
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.03
Grand average of hydropathy-0.856
Instability index71.95
Isoelectric point9.38
Molecular weight146454.78
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29455
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.89|      36|      39|     786|     821|       1
---------------------------------------------------------------------------
  219-  246 (40.55/ 6.31)	SQNSQQYIYQQQM....QHQL...LR....QKLQQQQQQ
  247-  272 (44.43/ 7.83)	QQQQQQ..QQQQQQQQ...........QQQNLLQSNQLQ
  794-  829 (60.37/14.07)	QQQEQQMLQNQQLKQQYQRQL...LQRKQQQMLQQQQQQ
  830-  864 (41.54/ 6.70)	QQQQQQ..QQQQLHQTSKQQLpaqLPTHQIQ..QLHQMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.08|      24|      24|     391|     414|       2
---------------------------------------------------------------------------
  391-  414 (41.47/12.36)	NNLSNLQQQQLINQQNNLSNMH.........QQ
  417-  449 (30.32/ 6.12)	NNVPGLQPQQVLGPQSGNSGMQtsqhsahvlQQ
  452-  473 (31.30/ 6.67)	QNASNLLPSQV..QQSQPQAPQ.........QQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.64|      29|      30|     895|     923|       4
---------------------------------------------------------------------------
  124-  151 (35.99/ 6.74)	NPGQ.QH.PI..PMPnQPPNRQQLLPQNIQNS
  895-  923 (50.36/12.89)	PHQQMKGSPF..PVS.SPQLLQATSPQIPQHS
  941-  968 (41.29/ 9.01)	TPLQSANSPFvvPTP.SPPL..APSP.MPGDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     330.59|      54|     109|     165|     218|       5
---------------------------------------------------------------------------
  165-  211 (75.82/20.91)	..........QNVG....QNNPNM...QNIPG..QNSVGSTISQN........SNMQ......................................NMFPGSQRQIQGRQQVV
  276-  321 (56.84/13.43)	..........QPAI....QTSTVM...QQ.PSmmQASLPS.IQHN........QQSN......................................NQ.QSTQSVLQQHSQVI
  322-  345 (40.10/ 6.83)	RQQQHQQ............................TSIIH................Q......................................QQTPMTQ......QSIL
  346-  382 (39.11/ 6.45)	PTQQQQQqqlMGAQ....ANAPNMhhtQILGS..QNNVG...................................................................DLQQ..
  482-  532 (64.36/16.39)	PAQLQQQ...LGLQ....QQ.PN.......PL..QRDV....QQRlqasgpllQQSN........................................VLDQQKQLYQSQRPL
  664-  753 (54.36/12.45)	PQSQPQV...TQVQshenQMNPQL...QTTNM..QGSV.ATMQQN.........NMAgmqhnslsgvstvqqskmnsmqpstnldsgpgnavnslQQVPV..SSLQ..QNPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     123.64|      25|      26|     987|    1011|       6
---------------------------------------------------------------------------
  987- 1011 (41.44/19.51)	QQTGGAAAPGQSLA..IGTPGI....SASPL
 1014- 1040 (32.62/13.95)	EFTGPDGAHGNSLAptSGKSTV....TEQPI
 1079- 1097 (22.48/ 7.56)	..NGSRAAVGEDLV..AMTN........CRL
 1098- 1123 (27.11/10.48)	QARNFITQDG...A..NGTRRMkrytNATPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.16|      17|      17|     556|     572|       7
---------------------------------------------------------------------------
  556-  572 (29.49/15.17)	EEVYQKI..KSMKESYLPE
  574-  592 (25.67/12.32)	NEMYQKIvsKLQQHDSLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.31|      17|      25|      16|      39|       8
---------------------------------------------------------------------------
   22-   38 (31.03/41.94)	RGGLH..HESRQRIVNKIM
   50-   68 (25.29/ 6.40)	QEGLHelQKIAQRFEEKIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.74|      13|     112|    1142|    1154|      12
---------------------------------------------------------------------------
 1142- 1154 (23.17/17.70)	EASDLDSTATSRF
 1259- 1271 (22.56/17.03)	ENEDLSVKAKSRF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29455 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IINFINTNRPRKNMPGHLLPPHMHSMPQSQPQVTQVQSHENQMNPQLQTTNMQGSVATMQQNNMAGMQHNSLSGVSTVQQSKMNSMQPSTNLDSGPGNAVNSLQQVPVSSLQQNPVSAPQQTNVNSLSSQAGVNVVQPNLNPLQPGSSMLQHQQLKQQQEQQMLQNQQLKQQYQRQLLQRKQQQMLQQQQQQQQQQQQQQQQLHQTSKQQLPAQLPTHQIQQLHQMNDANDIKMRQGIGVKPGVFQQHLTSSQRSAYPHQQMKGSPFPVSSPQLLQATSPQIPQHSSPQVDQQNHLPSLTKVATPLQSANSPFVVPTPSPPLAPSPMPGDSEKLISG
2) MDNNNWRPNQGTEANMDTSDWRGGLHHESRQRIVNKIMDTLKRHLPVTGQEGLHELQKIAQRFEEKIFTAA
3) NVLDQQKQLYQSQRPLPETSSTSLDSTAQTGQSSGGDWQEE
4) PLLAEFTGPDGAHGNSLAPTSGKSTVTEQPIERL
5) QQHQQTSIIHQQQTPMTQQSILPTQQQQQQQLMGAQANAPNMHHTQILGSQNNVGDLQQPQRLLTQQNNLSNLQQQQLINQQNNLSNMHQQLGNNVPGLQPQQVLGPQSGNSGMQTSQHSAHVLQQSQQNASNLLPSQVQQSQPQAPQQQLMPQIQSQPAQLQQQLGLQQQPNPLQRDVQQRLQASGPLLQ
6) QQNLLQSNQLQSSQQPAIQTSTVMQQPSMMQASLPSIQHNQQSNNQQSTQSVLQQHSQ
7) RKISLKMLTMETKSQGSMAPNLPTNQGGPSNKPPDPGLGIPPQVHNPGQQHPIPMPNQPPNRQQLLPQNIQNSIASQPSNIAQAPIQNVGQNNPNMQNIPGQNSVGSTISQNSNMQNMFPGSQRQIQGRQQVVPQQQQQQSQNSQQYIYQ
638
1
517
1010
324
262
79
974
71
557
1043
514
319
228










Molecular Recognition Features






MoRF SequenceStartStop




NANANA