<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29448

Description Uncharacterized protein
SequenceMASPAWLPQEAQPPVSGETPLPMASSTPNSAPATPSTAPAPASPFAHGMLQNVNASGSSQLLSTHPAIISNSAVNPMVVQPPGVSSHAAPSFSYNIPQSGAIFSSNQQHAQSSTDVSKLSSASSIPHSVPAHTSTSLMPPPSDPNYCPATSWMPTALSFPVHPVMPTQGNPGPPGLASSAIISSNPAAPSIPALAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTPTPSASSYQLRGTTALQTEVISGSADDKKKLNSVDTLNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYHKPSGFKGESHQVSAQPTPVSMIDLPGTDWRLVSTSDGKKYYYNNLTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSTLQNSSSALDLIKKKLQDSGTPITPSSIHAPSVQIGPESNGSKTVDSTAKGVQVDNNKDKQKDTNGDADVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDFQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDMSFNSRWARVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQRRATNPDLDPSDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETNDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASYDSREEKHTDAKGRTYLESSKHPLESGRSHERR
Length930
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.790
Instability index51.98
Isoelectric point8.42
Molecular weight102550.53
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29448
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     423.77|      66|      66|     594|     659|       1
---------------------------------------------------------------------------
  531-  590 (59.80/26.29)	....IIQFKEMLKE..RGV...APFSKWEKELP.......KivfD...PRFKA....I.PsysarRSLFEHY...VKTR.....AEE....ERKEK
  594-  659 (108.23/52.73)	QKAAIEGFKRLLDEASEDINYNTDFQTFRKKWG.......N...D...PRFEA....L.D.....RKEQEHL...LNERVLPLKKAA....EEKAQ
  662-  721 (85.19/40.15)	RAAAAASFKSMLKERG.DMSFNSRWARVKESLR.......D...D...PRYKS....V.R.....HEDREVL...FNEYISEL.KAA....E....
  722-  762 (29.82/ 9.92)	.HAA...................ERETKAKREE.......Q...DklrERERE....LrK.....RKEREEQ...EMERV.RLK............
  766-  832 (81.68/38.23)	.KEAVTSFQALLVETIKD..PLASWTESKPKLE.......K...D...PQRRAtnpdL.D.....PSDTEKL...FREHVKMLQERC....AHEFR
  835-  904 (59.05/25.88)	LAEVLTS.....DAASQETN...DGKTVLNSWStakrllkS...D...PRYNK....V.P.....RKEREALwrrYAEDMLRRQKASydsrEEK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     120.60|      15|      52|      22|      36|       2
---------------------------------------------------------------------------
   22-   36 (30.45/12.99)	PMASSTPN.SAPATPS
   44-   58 (20.63/ 6.34)	PFAHGMLQ.NVNASGS
   76-   91 (20.34/ 6.14)	PMVVQPPGvSSHAAPS
  120-  134 (24.09/ 8.68)	SSASSIPH.SVPAHTS
  138-  151 (25.08/ 9.35)	MPPPSDPN.YCPAT.S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     297.52|      51|      51|     308|     358|       3
---------------------------------------------------------------------------
  202-  249 (67.21/32.05)	WLQPPQMSGVLrppY....L...QY..PAPFPGPFPFPARG.......VALPAVPIPDSQP..PGV
  255-  294 (43.04/17.92)	AGGTPTPSASS...YQLRGT...TA..LQT.EVISGSADDK.......KKLNSVDT..........
  308-  358 (83.11/41.34)	WTAHKTEAGII...YYYNAV...TG..ESTYHKPSGFKGES.......HQVSAQPTPVSMIDLPGT
  360-  410 (74.16/36.11)	WRLVSTSDGKK...YYYNNL...TK..TSCWQIPNEVAELK.......KKQDGDVTKDHLMSVPNT
  413-  464 (30.00/10.29)	LSDR..GSGMV...TL.NAPainTGgrDAAALKPSTLQNSSsaldlikKKLQDSGTPI........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.03|      12|      16|     474|     487|       4
---------------------------------------------------------------------------
  474-  487 (15.22/13.19)	VQIgpESNGSKTVD
  493-  504 (20.81/ 9.96)	VQV..DNNKDKQKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.92|      18|      23|     158|     176|       7
---------------------------------------------------------------------------
  158-  176 (33.87/20.99)	SFPVHPVMPTQGNPgPPGL
  184-  201 (34.04/16.42)	SNPAAPSIPALAAP.PQGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29448 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVR
2) ALQTEVISGSADDKKKLNSVDTLNEDAANNDQLDA
3) EVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSTLQN
4) GAIFSSNQQHAQSSTDVSKLSSASSIPHSVPAHTSTSLMPPPSDPN
5) MASPAWLPQEAQPPVSGETPLPMASSTPNSAPATPSTAPAPASPFAHGMLQNVNASGSSQLL
6) QKASYDSREEKHTDAKGRTYLESSKHPLESGRSHERR
7) SALDLIKKKLQDSGTPITPSSIHAPSVQIGPESNGSKTVDSTAKGVQVDNNKDKQKDTNGDADVSDTSSDSEDEDNGPSKEECII
8) VALPAVPIPDSQPPGVTPVGAAGGTPTPSASSYQLRGT
9) WTESKPKLEKDPQRRATNPDLDPSDTEKLF
720
273
387
100
1
894
448
234
787
760
307
445
145
62
930
532
271
816










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
452
457