<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29444

Description Uncharacterized protein
SequenceMDQSQNQRPATSTTTPSRSFQFHPLRVPIFDLFNLYLGLGRNSRQKPDDSLRDPPNKTQKRVHALNRELPPPNEQFILDFEQLQSQCADQDQLRSVTEAILISLVVQCSGHGPRADFLLFVLRSLCGIGCINWDSLLPSLLSSVSSAELPVGQLSQAVPTVSSSSLSQTGMLPPPSTIANSSNFQSSNPASPLTSVHTIGSPAQSTMEPLSCAAMSPVKSSDISSAGQQSKLRGSPSVRTNDISNSSLRQLCCKIILTGLEFSLKPVTYAEIFNYMLNWLVNWDQRQQGIDESDVIKSWRPDKAVIAWLHSCLDVIWLLVDEGKCRVPFYELLRSDLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILNQTIPNVSGEAVAHLRLSPITYLSVLGEPLHGEDIASSIQKGSLDWERAVRCIRHALRTTPSPDWWRRVLVLAPCYRNSSQGPTAGAVFSSEMICEATIDRIVELLKMTNSEINCWQDWLVFSDIFYFLIKSGCIDFVDFVDKLVSRLTEGDHHILKTNHVTWLLAQIIRIELVMNALNSDPRKVETTRKILSFHREDRSSDPNNPQSILLDFVSSCQNLRIWSLNSSTREYLNNEQLQKGKQIDEWWRQASKGERMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWLNSAGVADLLPGANLQQAERLMATREVSPLPMSLLSGFSINLCVKLSYQMEDSLFSGQVIPSIAMVETYTRLLLLAPHSLFRSHFNHLVQRNPSLLSKPGVTLLVLEILNYRLLPLYRYQGKSKALMYDVTKIISAIKGKRGDHRVFRLAENLCLNLIFSLRDFFLVKREGKGPTEFTETLNRVTVITLAILIKTRGIADAEHLLYLQNMLEQIMATSHHTWSEKTLHHFPSVLREALSGQTDKRSLAIQTWQQAETTVIHQCTQLLSPSADPSYVMTYISHSFPQHRQYLCAGALILMHGHAENINSGNLGRVLREFSPEEVTSNIYTMVDVLLHHMQIELQQGHSSQDLMLKACASIAFFVWTNELLPLDILLLALIDRDDDPHALRMVISLLDRPELQQRVKHFCMTRGHPEHWLYSGIFKRVELQKALGNHLAWKDRYPVFFDDIAARLLPVIPLIIYRLIENDAMDTAERLLAMYSPLLAYYPLRFTFVRDILAYFYGHLPGKLIVRILNVLDISKIPFSESFPQQISLTNPVMCPPLDYFTTLLLGIVNNVIPPLHNNSKSGSMGDASSNTLRTAQSKPPAVSQSGSANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPISASQIVQSLVQIVVNIQPTLIQSSNALHGGSNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSNFASRSGYTCQQLSCLLIQACGLLLAQLPSDFHSQLYLETTRIIKENWWLKDGTRSLGEIDSAVGYALLDPTWAAQDNTSTAIGNVVALLHSFFSNLPQEWLEGTNVIIKQLRPVTSVAMLRIAFRVMGPLLPKLANAHALFNKTLSSLLTILVDVFGKNSQTSIAVDASDIADIIDFLHHVVHYEGQGGPVQASSKPRPEVLALIGRASESLRPDIQHLLSHLNPDVNSSVYAAFHPKLAQNPT
Length1615
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.061
Instability index46.88
Isoelectric point6.47
Molecular weight180625.32
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29444
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     418.06|     100|     102|    1180|    1281|       1
---------------------------------------------------------------------------
 1180- 1234 (73.98/46.45)	................................................PGKLIVRILN..VLDISKIPFSESFP.QQ.ISLTNPV..MCP......PLDYFTTL.LLGIVNNV.IPP
 1235- 1341 (136.19/97.49)	LHNNSKSGSMGDASSNTLRTAQSKPPAVSQSGSANASEGQKAFYQiqdPGTYTQLVLEtaVIEILSLPISASQI.VQ..SLVQIVvnIQP......TLIQSSNA.LHGGSNSVgQGS
 1342- 1416 (95.37/63.29)	VLPTSPSG....GSTDSLGASRSTP...SVSGINTSNFASRSGYT.............................cQQ.LSCLLIQ..ACGlllaqlPSDFHSQL.YLE.TTRI.IKE
 1420- 1500 (112.52/76.30)	LKDGTR..SLGEIDS.AVGYALLDPTWAAQDNTSTA...................IGN..VVALLHSFFS.NLP.QEwLEGTN.V..IIK......QLRPVTSVaMLRIAFRV.MGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.94|      25|     102|      69|      96|       2
---------------------------------------------------------------------------
   69-   96 (35.77/30.88)	LPPPNEqfILDFEQLQSQcADQDQLRSV
  172-  196 (45.17/25.61)	LPPPST..IANSSNFQSS.NPASPLTSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.55|      20|     180|     317|     341|       3
---------------------------------------------------------------------------
  317-  341 (31.50/31.94)	WLLVDEgkcrvPFYELLRSD.LQFIE
  504-  524 (33.05/19.64)	WLVFSD.....IFYFLIKSGcIDFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.96|      19|     110|     546|     565|       4
---------------------------------------------------------------------------
  546-  565 (30.01/22.58)	VTWLLAQIIrIELVMNALNS
  659-  677 (38.95/24.75)	VTYTMAQPA.CETVMNWLNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29444 with Med23 domain of Kingdom Viridiplantae
Unable to open file!