<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29436

Description Uncharacterized protein
SequenceMRQGEANSTQGPKVNLLQHANALENFSSQAKFLSSTFLFSVPPKKPPHHAEPNPGTAGFVFRRSETIQGSHRVQVEKALTAHSSLQNSSRIYVQLGKTQVTPQLHEDRRTTSFHGRYENDSRICPDVTVTPIVNNHSSRGLDGLVNNHTNYTGQIIKSSNCMAVDIDDDDDAILANIDVDQIVEEHQSTCTPKPSISKFPPITPTADKDNFARQGDNVLPPELCLDCIHGYKLGFCPEAASHLQEMKDNLIAISNELLDNGENLNSTQIAKLRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTAPPTSFVYETPQQTVLCNGSKRYDTQAYMGNETYGSSFQSLPSFSVDNCNMPLGSVGREAFIPKIIEVNYIEGSGDKRWSSYDFPWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRVNHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYNYSDYIRVKHMLSQGAIEQSSMTSGYNRSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIANQLVELVKLTGQRFSSSHILEVYRGSLSQMVKKHRHETVSLHGAGKHLAKGEASRILHHLVVEDFLGEEVKKSDFYGSVSSILKVNEPKVRNLFAGQRIILRFPSSVKASKPGKSDATPAKGSLTSEKLNVMQIDPPSPQTEVDHILSAKLYNALRLLRKSLVTEAGEGVMPHHIFGNATLLLISKRVPRTKEELLDINGIGKAKVSKYGDQLLETIEKTVNEHYKLDNIGSGSKGSADSTKKRRVPNGNSDTNVEDDDAPTKSTGRSKKRTVKRQNRKGVIYDSPEEDYFQGCPDEDLDFDIIEIDALDQVTCKNTAGRVLPQWTAS
Length1160
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.488
Instability index45.91
Isoelectric point7.38
Molecular weight129925.54
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29436
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.34|      21|      25|     726|     746|       1
---------------------------------------------------------------------------
  726-  746 (39.30/27.13)	QRSSCILYYNYSDYIRVKHML
  752-  772 (37.04/25.13)	EQSSMTSGYNRSNMINSGRIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     621.49|     200|     221|     225|     445|       2
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  225-  443 (305.32/241.52)	LdcIHGYKLGFCPEAASHLqeMKDNLIAisNELLDNGENLNSTQIAK.LRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTApptSFVYETPQqtvlCNGSKRYDTQA.YMGNETYGSSFQSLPSFSVDNCNMplGSVGREAFIP.KIIEVNYIEGSGDK..RWSSYdFPWTKE.LEVNNKKVFGNHsFrpNQREIINA.SMSGCD.VFVLMPTGGGKSLTYQ
  454-  661 (316.17/190.87)	L..VISPLVSLIQDQIMHL..LQANIPA..AYLSANMEWAEQQEILReLNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHFRELLA...RIVIDEAH....CVSQWGHDFRPdYQGLGILKQKFPNTPVLALTATAT..ASVKEDVVQAlGLVNCIIFRQSFNRpnLWYSV.VPKTKKcLEDIDKFIRVNH.F..DECGIIYClSRMDCEkVAEKLQECGHKCAFYH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.24|      19|      21|     784|     804|       3
---------------------------------------------------------------------------
  784-  804 (31.45/25.43)	SYCENdvDCRRLLQLAHFGEK
  808-  826 (35.79/22.17)	STCQK..TCDNCLKITSFIEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.96|      10|      21|      67|      76|       5
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   67-   76 (17.65/10.53)	IQGSHRVQVE
   85-   94 (17.30/10.17)	LQNSSRIYVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.88|      16|      21|     944|     964|       6
---------------------------------------------------------------------------
  944-  961 (18.72/28.14)	PgKSDATPAKGSLtSEKL
  968-  983 (29.16/15.10)	P.PSPQTEVDHIL.SAKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.11|      21|      26|    1069|    1089|       7
---------------------------------------------------------------------------
 1069- 1089 (35.59/21.04)	SADSTKKRRVPNGNSDTNVED
 1096- 1116 (35.52/20.99)	STGRSKKRTVKRQNRKGVIYD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.56|      49|     154|     838|     910|       8
---------------------------------------------------------------------------
  859-  910 (72.75/74.73)	LSQMVKKHRHETVSLHGAGKHLAKGEASRILHhlVVEDFLGEEVkKSDFYGS
 1016- 1064 (79.82/38.42)	ISKRVPRTKEELLDINGIGKAKVSKYGDQLLE..TIEKTVNEHY.KLDNIGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29436 with Med34 domain of Kingdom Viridiplantae
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