<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29405

Description Uncharacterized protein
SequenceMDKILEADANNMSQHSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHGGIKGVPTPLGNVIPLSQVRNDVATAFKKEVEWQTNQMLLPFKRMCEQRKVHVDVIVIESDDVATAIADEVAKGAITKLVVGASSRGLFKSKQKGMSTRISVSTPRFCTIYAISKGKLSIRPSDMPIDGNIIDDASESETSLSTSSSSNYTSTSQTESASVSSYAALQSSSLTTQRFQALSSINSALLSTNPSFADTNHSRGQSLDLGRENTASSSARNSDIDHALSRVSSCKSFISDTESWMYDQNSCKDVQLATTLPSPNRQAKYNLELEKLRIELRHAQGLHAVAQTEKIEASRKLNDLSKRRSEETMRMKEIISKEEKAKELAKLEREKYQDASREAEYLKECAEREAAEKKEMELRAIRAAKEKEKLEDALSGSTPQYRKFTWDEIILATSSFSEDLKIGMGAYGVVYKCNLYHTTVAVKVLTLNTNVNSKRKQFQQELEILSRIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNNTSPIPWFERFRIALEVASSLAFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDIGLSTVLNSDNLSIMSKDTAPVGTLCYIDPEYQRTGLISPKSDIYAFGMVILQLLTAKPAIALAHKVETAIDSGNLTDILDPEAGAWPYQETLDLALLGLSCAELRRRDRPDLQDHVLPTLERLKEVVDRAQCSASIVTIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENDKSPMTNMALPHKHLIPNYTLLSAILEWKSRES
Length810
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.362
Instability index42.94
Isoelectric point7.02
Molecular weight90252.93
Publications
PubMed=20075913

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29405
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.75|      21|      26|     240|     260|       1
---------------------------------------------------------------------------
  194-  214 (28.96/15.74)	SETSLSTSSSSNYTSTSQTES
  240-  260 (36.45/21.69)	NSALLSTNPSFADTNHSRGQS
  267-  287 (30.34/16.84)	NTASSSARNSDIDHALSRVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.17|      23|      39|     336|     358|       2
---------------------------------------------------------------------------
  336-  358 (36.52/28.22)	HAQGLHAVAQTEKIEASRKLNDL
  378-  400 (35.65/27.36)	KAKELAKLEREKYQDASREAEYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29405 with Med32 domain of Kingdom Viridiplantae
Unable to open file!