<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29397

Description Uncharacterized protein
SequenceMAVVSPMPATPPQVNPVNLLRNTGVPGIMTSRREIVNEPSPSMVNETIYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPAPMIPLALMGAKFPASALREEGVQDYHERERLKMHKTLDAYLFICQRMGVRARKLLHIEMDCIEKGIVELISRYGIQKLVMGAASDKYHSRRMTSLRSKKAIYVCEQAPASCHIQFICNGYLIHTRDCSLNRGNVEVEFPLLQQMANSEVGHSPNLSFQSILQGQNHGIKLTNPAQELFRRVRSVNDGHMRSLESVSSSEGFLTPPSKFSKNISSIEPGLTPNLINDGSENALDLILNYPSLINKDLHHSSSPSVLDEGMDDALYYQLEQVMAEASNARRDAYQETVRRSKAEKDAIDAIHRAKATENLYKEELKLRKEQEEAVEKANEKLNNMKSQTDKVNEELRLALDQNSSLENQIASTELMVKELKQKIISALDLLQNYKDELDDLQIQRDNAVGEAEEFRSKQGEASSSAQELHCFSDFSFQEIKEATSNFNPSKKIGEGGYGSIFKGVLRHTEVAIKMLNPDSTQGPLEFQQEVEVLSKLRHPNLITLIGACAESWTLVYEYLPNGSLEDRLNRKDNTPPLSWQTRICIAAELCSALNFLHSNKPHSIAHGDLKPANILLDANLVSKLSDFGICRILSCQDSSSNSTTQFWRTVPKGTFVYVDPEFLASGELTPKSDVYSFGIILLRLMTGKPALGIIKEVQYALDAGKLKSILDPLAGEWPFMLAEELIRLALRCCEMNRKNRPELYSDVWRILEPMRASSVVTNTSQLGSQRLCQPPPYFICPIFLEVMQDPHVASDGFTYEAEAIREWLESGRDTSPRTNSKLAHRNLVPNHALRHAIQNWLQSH
Length877
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.368
Instability index45.92
Isoelectric point6.30
Molecular weight98481.29
Publications
PubMed=20075913

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29397
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     102.76|      20|      72|     393|     412|       1
---------------------------------------------------------------------------
  366-  381 (21.22/11.40)	YQETV.RRSKAEKDAI....D
  393-  412 (30.66/19.76)	YKEEL.KLRKEQEEAVEKANE
  424-  443 (26.01/15.65)	VNEEL.RLALDQNSSLENQIA
  466-  486 (24.87/14.64)	YKDELdDLQIQRDNAVGEAEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.70|      32|     188|     606|     640|       2
---------------------------------------------------------------------------
  606-  640 (52.71/40.96)	NTPPLSWQtRICIAAE..LCSAlnFLHSNK.PHSIAHG
  795-  829 (52.99/30.91)	NTSQLGSQ.RLCQPPPyfICPI..FLEVMQdPHVASDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.10|      57|     292|       8|      74|       5
---------------------------------------------------------------------------
    8-   74 (80.49/84.71)	PATPPQV......NPVNLLRNtgVPGIMTsrREIVNEPSPSMVNETIyvavaKDVKDSKLNLIWAiQNSGGRR
  301-  363 (91.61/63.87)	PGLTPNLindgseNALDLILN..YPSLIN..KDLHHSSSPSVLDEGM.....DDALYYQLEQVMA.EASNARR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.86|      26|     291|     232|     257|       6
---------------------------------------------------------------------------
  232-  257 (46.22/30.43)	EVGHSPNLS.FQSILQGQNHGIKLTNP
  506-  521 (21.37/10.17)	......DFS.FQEIKEATSN....FNP
  524-  550 (40.27/25.58)	KIGEGGYGSiFKGVLRHTEVAIKMLNP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29397 with Med32 domain of Kingdom Viridiplantae
Unable to open file!