<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29393

Description Uncharacterized protein
SequenceMAEKQLIVAVESTAAMGPYWNTILMDYLDKMIRCFGGNDSTGQKFSASNVEFALVTYNTHGCYSSCLVQRSGWTRDPDVFFSWLSSIPFNGGGFNDAAIAEGLSEALMMLWNSQSGAPNQQSVDMHKHCILVAASNPYPLQTPVYVPRPQNLEQSETIDSDSGSHLYDAEAVAKAFPQFSISLSVICPKQLPKIKSIYNAGKRNNRAADPPLEAKTPHFLILISEGFREARGALSRSGITSLPSNQSPVKVDAVSVTPVTGAPPTSMPVNGSIPNRQPVPAGNVAPATVKVEPVPVTSMVSGPAFPHNSSVPRATSTSQGVPSLQTSSPSSVSQDIITNNETAQDTKPTVSMLPLRPVNPVQANVNILNNLSQARQVMNSAALSGGTSMGLPSMGQTPVAMHMSNMISSGMTSSVPAAQNVFSSGQSGITSMTSSGPLTVPAQVGQNSGLGSLTSNTSNLSSSSNIGISQPLGNLQGVVSIGQQVSGMSQGNLSGAQMVQGGVSMNQNVMSGLGQSVVSSGTGTMIPTPGMSQPVQSVMQPLVNNAAANMPLSQQTSGGMQSAQSKYVKVWEGSLSGQRQGQPVFITKLEGYRNSSASETLAANWPPVMQIVRLISQDHMNNKQYVGKADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAFRLIGMLFPGDMVVFKPQLSSQQQQQMQQQHQQMQNQQQHLPQLQQQQQLPHMQQQQLPQLQQQQQQLPQLQQQQQQLPQLQQQQQQLPQLQQQQQQLPQLQQQQQQLPQLQQQQQQVQQQQLAQLQQQQLPQIQQQQQLPQLQQLPQLQQQQQLPQLQQLQPQQQQMVGSGMGQAYVQGPGRSQLVSQGQVSSQGATNIGGGGFMS
Length877
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.04
Grand average of hydropathy-0.402
Instability index70.37
Isoelectric point8.88
Molecular weight94547.74
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29393
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     254.92|      19|      19|     729|     747|       1
---------------------------------------------------------------------------
  712-  727 (39.55/ 9.31)	PQLQQ.QQQLPHM..QQQQ
  729-  747 (47.87/12.69)	PQLQQQQQQLPQLQQQQQQ
  749-  767 (47.87/12.69)	PQLQQQQQQLPQLQQQQQQ
  769-  787 (47.87/12.69)	PQLQQQQQQLPQLQQQQQQ
  794-  809 (36.15/ 7.93)	AQL..QQQQLPQI.QQQQQ
  811-  824 (35.63/ 7.72)	PQL....QQLPQL.QQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     129.15|      19|      19|     425|     443|       2
---------------------------------------------------------------------------
  425-  443 (32.89/14.41)	GQ....SGITSMTS......SGPLTVPAQ
  482-  497 (23.36/ 7.62)	GQ..qvSG...M.S......QGNLS.GAQ
  514-  536 (27.09/10.27)	GQsvvsSGTGTMIP......TPGMSQPVQ
  539-  557 (24.44/ 8.38)	MQ....PLVNNAAA......NMPLSQQTS
  558-  580 (21.38/ 6.20)	G......GMQSAQSkyvkvwEGSLSGQRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.53|      28|      94|     298|     325|       3
---------------------------------------------------------------------------
  266-  303 (29.28/ 9.77)	SMPVNGSIPN....RQPVP.....A.GnvapatvkvepvpvtSMVSGP
  304-  335 (43.21/17.89)	AFPHNSSVPRATSTSQGVP.....SLQ...........tsspSSVSQD
  336-  366 (23.03/ 6.12)	IITNNETAQDTKPTVSMLPlrpvnPVQ...............ANVN..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.93|      13|      37|     245|     257|       4
---------------------------------------------------------------------------
  245-  257 (23.27/14.51)	NQSP..VKVDAVSVT
  283-  297 (19.65/11.09)	NVAPatVKVEPVPVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.94|      16|      37|     409|     424|       5
---------------------------------------------------------------------------
  409-  424 (26.68/11.50)	SGMTSSVPAAQNVFSS
  448-  463 (23.86/ 9.52)	SGLGSLTSNTSNLSSS
  466-  481 (23.40/ 9.19)	IGISQPLGNLQGVVSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.14|      12|     126|     700|     711|       7
---------------------------------------------------------------------------
  700-  711 (24.60/11.15)	QHQQMQNQQQHL
  827-  838 (23.54/10.24)	QLQQLQPQQQQM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29393 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRSGITSLPSNQSPVKVDAVSVTPVTGAPPTSMPVNGSIPNRQPVPAGNVAPATVKVEP
2) PVTSMVSGPAFPHNSSVPRATSTSQGVPSLQTSSPSSVSQDIITNNETAQDTKPTVSMLPLRPVN
3) QVMNSAALSGGTSMGLPSMGQTPVAMHMSNMISSG
4) SVPAAQNVFSSGQSGITSMTSSGPLTVPAQVGQNSGLGSLTSNTSNLSSSSNIG
233
295
376
414
293
359
410
467










Molecular Recognition Features






MoRF SequenceStartStop




NANANA