<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29390

Description Uncharacterized protein
SequenceMDAEGRLRRALAAFGGGVEGVWELVDAALASAPPAELRARRDGIVERLYAAGSRCRNCDAVPQLARQPAAAAAAALSPEEDADVDGLGEDEEEADDDEAAGAESKILAIRDFLEDPDQSEDELVSLLQNLADMDITYKALQDTDIGRHVNSLRKHPSGEVRQLVKLLVRKWKEIVDGWVRLHNSGGDGGSSILTDGDSPEKTQGKSYQNAQVSDFKYSPSPQRHNRSSNNNGFETTMERHRASPAPSYNQTKQNSSNNYSTTSSAPPRTMREQKDNNLDLEKLDSARKRLHENYQEAQNAKKQRTMQVLDIHDIPKPKNRNTFIRKGGGGGLPGRHR
Length337
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-0.926
Instability index53.87
Isoelectric point5.72
Molecular weight37119.43
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29390
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.29|      32|      40|     182|     217|       1
---------------------------------------------------------------------------
  182-  217 (53.54/37.12)	HN.SGGDGG..SSILTDGDSPektqGKSY.QNAQVSDFKY
  224-  259 (44.74/23.45)	HNrSSNNNGfeTTMERHRASP....APSYnQTKQNSSNNY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.90|      19|      42|      27|      46|       2
---------------------------------------------------------------------------
   27-   46 (28.59/26.35)	AALASAPPAElRARRDGIVE
   71-   89 (32.31/24.13)	AAAAALSPEE.DADVDGLGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.52|      17|      34|     268|     289|       4
---------------------------------------------------------------------------
  268-  289 (22.38/31.82)	RTMReqkdnNLDLEKLDSARKR
  304-  320 (31.14/25.18)	RTMQ.....VLDIHDIPKPKNR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29390 with Med26 domain of Kingdom Viridiplantae
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