<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29389

Description Uncharacterized protein
SequenceMDAEGRLRRALAAFGGGVEGVWELVDAALASAPPAELRARRDGIVERLYAAGSRCRNCDAVPQLARQPAAAAAAALSPEEDADVDGLGEDEEEADDDEAAGAESKILAIRDFLEDPDQSEDELVSLLQNLADMDITYKALQDTDIGRHVNSLRKHPSGEVRQLVKLLVRKWKEIVDGWVRLHNSGGDGGSSILTDGDSPEKTQGKSYQNAQVSDFKYSPSPQRHNGLSSDRSSNNNGFETTMERHRASPAPSYNQTKQNSSNNYSTTSSAPPRTMREQKDNNLDLEKLDSARKRLHENYQEAQNAKKQRTMQVLDIHDIPKPKNRNTFIRKGGGGGLPGRHR
Length342
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-0.918
Instability index53.13
Isoelectric point5.61
Molecular weight37578.88
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29389
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.59|      43|      47|     198|     243|       1
---------------------------------------------------------------------------
  194-  217 (30.61/14.52)	......................TDGDSPEKTQGKSY.QNAQVSDFKY
  218-  264 (67.66/50.49)	SPSPQRHNGLSSDrssNNNGFETTMERHRASPAPSYnQTKQNSSNNY
  268-  303 (55.32/33.70)	SSAPPRTMREQKD...NNLDLE.KLDSARKRLHENY.QEAQ......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.20|      35|      37|      11|      46|       2
---------------------------------------------------------------------------
   11-   46 (58.44/38.40)	LAAFGG...GVEGVWELVD....AALASAPPAElRARRDGIVE
   48-   89 (48.77/27.62)	LYAAGSrcrNCDAVPQLARqpaaAAAAALSPEE.DADVDGLGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29389 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAAAAAALSPEEDADVDGLGEDEEEADDDEAA
2) GGDGGSSILTDGDSPEKTQGKSYQNAQVSDFKYSPSPQRHNGLSSDRSSNNNGFETTMERHRASPAPSYNQTKQNSSNNYSTTSSAPPRTMREQKDNNLDLEKLDSARKRLHENYQEAQNAKKQRTMQVLDIHDIPKPKNRNTFIRKGGGGGLPGRHR
69
185
100
342










Molecular Recognition Features






MoRF SequenceStartStop




1) AESKILAIRDFLE
2) LPGRHR
3) RLRRAL
4) VLDIHDIPKPKNRNTFIRKGG
102
337
6
313
114
342
11
333