<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29388

Description Uncharacterized protein
SequenceMAQPPAGGGGGGGGHHWLATAPPDLRAKVVRKIIKTLPRPNGPPDQHQLAHLHAVASRYEARVFGAATSMQDYITTVSKKMTQIQNRDQTSAHAASNLQQPAQMGSQMQQANAAQANYSVRPLQMAPAARPSATHQTQHPPSHISSGLCNLQPQPQPQPRLMGIMNQQHLRRVNQMQRVQQANVAVMQNGHPGGQNKNNQQYESPPTSEIITRNNAEEVEWREDLFQKITSLKDAHFTELMEYDRALDVCDITNEQFESMPEKKADRCRKLQKIKGMIQTVLSFLQLQKGNIPKQAMGQLGKFQDIISGLRQFFRMERKKATIAARNCRELPHVASPAGTTAPPTSGMDTQHEHREVPAVETISSQPTQSSPTRSTPLALEPNESNTANLAGEAEDDGQAEMLGEAGAPVADAATFTGGTCSQEEHPADETVIPQMSQNVPPGGTYSQEEDQENTEDEPVISELTQNAPPEGTCIQEEEQQEQAVIIPELTQNVPPGGMTQPAQQQDRSADQAESPNEACVTAEAPVSMDQPPIKSGDKAEALRGLARELGLNLGRSTRLRRTIDSVSCEEEETSEPESKRQKMQSFGYGYITDRVLDEVRDAHRALLETEVSIISDTTGAAAAADGPSMVVGFFYTAVTLPPDFRGAFEVSEVYAKLLVPADYPRSSPAVLPRGELREGFPCSVDAAFQDAFSKLPEHRSIVDIARAFDSCVRSVVAEFVKMIRMWELESYMESRRQYMQNYDPRMGSCICK
Length753
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.05
Grand average of hydropathy-0.651
Instability index58.37
Isoelectric point5.31
Molecular weight82706.62
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29388
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     204.84|      42|      52|     392|     443|       1
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  331-  373 (60.23/30.68)	............LPHVASPAGTTAPPTSGMDTQH...EHrevPAVETI.SSQPTQSSPT
  391-  442 (72.74/60.05)	AGeaeddgqaemLGEAGAPVADAATFTGGTCSQE...EH...PADETV.IPQMSQNVPP
  443-  470 (42.31/21.10)	GG......................TY.....SQEedqEN...TEDEPV.ISELTQNAPP
  472-  496 (29.56/ 9.58)	............................GTCIQE...EE...QQEQAViIPELTQNVPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.85|      22|      24|      88|     109|       2
---------------------------------------------------------------------------
   88-  109 (40.48/21.59)	DQTSAHAAS...NLQ.....QPAQMG..........SQMQ
  111-  130 (24.98/10.55)	..ANAAQAN...YSV.....RPLQMA..........PAAR
  138-  177 (22.39/ 8.71)	QHPPSHISSglcNLQpqpqpQPRLMGimnqqhlrrvNQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.95|      50|      54|     214|     265|       3
---------------------------------------------------------------------------
  214-  265 (78.90/56.63)	NNAEEVEWREDLFQKITS...LKDAHFTE..LMEYDRALDVcdITN.EQFESMPEKKA
  266-  321 (68.05/41.74)	DRCRKLQKIKGMIQTVLSflqLQKGNIPKqaMGQLGKFQDI..ISGlRQFFRMERKKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.60|      25|     618|       2|      44|       4
---------------------------------------------------------------------------
   20-   44 (46.29/50.45)	TAPPDLR.AKVVRKIIKTLPRPNGPP
  640-  665 (41.30/13.07)	TLPPDFRgAFEVSEVYAKLLVPADYP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29388 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARNCRELPHVASPAGTTAPPTSGMDTQHEHREVPAVETISSQPTQSSPTRSTPLALEPNESNTANLAGEAEDDGQAEMLGEAGAPVADAATFTGGTCSQEEHPADETVIPQMSQNVPPGGTYSQEEDQENTEDEPVISELTQNAPPEGTCIQEEEQQEQAVIIPELTQNVPPGGMTQPAQQQDRSADQAESPNEACVTAEAPVSMDQPPIKSGDKAEAL
2) TTVSKKMTQIQNRDQTSAHAASNLQQPAQMGSQMQQANAAQANYSVRPLQMAPAARPSATHQTQHPPSHISSGLCNLQPQPQPQPRLMGIMNQQHLRRVNQMQRVQQANVAVMQNGHPGGQNKNNQQYESPPTSEIITRNNA
325
75
543
216










Molecular Recognition Features






MoRF SequenceStartStop




1) HHWLATAPPDLRAKVVRKIIKTL
15
37