<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29387

Description Uncharacterized protein
SequenceMAAGGHHWLAAAPPNFRAKVVEKMMKKFPQPNGPDQLAQVHAVASRFEAIAFRAATGMRDYLTRISKKMIQIQNIQQQTAAPNLQQQAHVGFQMQQANAAQANYSVRPPPMAPAVRPSVAPQTQRPASHISSGMCKQQPQPQPRLVGIMNQQHPRRVNLMQRVQQANNVAVMQTGHPGGQNKNNQQYESPPTSEIITRNNAEEVDWREDLFQKITLLKDAHFAELMEYDRALDVRDITNEQFESMPEQQAKKCRQMQTIKGMIQRVLSFLQLQKGNIPEQAMGQLDKCQAMIFGLLDFFRMERKKATIAARNCREPPQVASPARTTAPPTGGMDTQHEHREAPAVETISTQPTQSSPARSTPLALEPNESDTANLAGEAEDDGQAEMQSEAGAPVADAATFTGGTCSQEEEHREHPVDEAVIPEMSQNVPPGGTCSQEEDQENTEDEPVISELTQNATPEGTCIQEEKQQEHPADEAVIMPELTQNEVCVTAEVPVSMEPPIESGDKAEAFRSVARELGLNLGRGTRLRRTIDYEEEDAWEPETKRQKTQSFGFGCGYGYGYVNDAVLDEVRDAHRALLETEVSIIRDTTASSEMVVGFFYTSVTLPPDFRGACEVSEVYAKLLVPADYPRSSPAVLPRGEMREGFPCAVDVAFRHAVGELPEPRSIVDIARAFDSCVRSVGTEFVNMMRRWELESYMENYDPRMGSCISM
Length711
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.614
Instability index55.33
Isoelectric point5.04
Molecular weight78962.79
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29387
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     162.78|      26|      27|     431|     456|       1
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  329-  354 (35.53/16.06)	...PtGGMDTQHE.H.REAPAVETIS.TQPTQ
  403-  427 (39.78/18.81)	.....GGTCSQEE.EhREHPVDEAVI.PEMSQ
  428-  455 (46.89/23.43)	NvpP.GGTCSQEE.D.QENTEDEPVI.SELTQ
  456-  485 (40.58/19.33)	NatP.EGTCIQEEkQ.QEHPADEAVImPELTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.36|      19|     160|     506|     524|       2
---------------------------------------------------------------------------
  506-  524 (32.87/25.76)	DKAEAFRSVARELG...LNLGR
  669-  690 (30.49/23.33)	DIARAFDSCVRSVGtefVNMMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     198.95|      53|      54|     139|     191|       3
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   84-  110 (45.68/20.79)	LQQQAH.VGF..............QM...QQANAAQ.............ANYSVRPPP
  139-  190 (89.41/47.03)	PQPQPRLVGIMNQQH.PRRVNLMQRV...QQANNVAVMQTGHP.GGQNKNNQQYESP.
  191-  246 (63.87/31.70)	..PTSEIITRNNAEEvDWREDLFQKItllKDAHFAELMEYDRAlDVRDITNEQFESMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.91|      43|     592|      13|      57|       4
---------------------------------------------------------------------------
   13-   57 (74.06/46.41)	PPNFR.AKVVEKMMKKFPQPngPDQLAQVHAVASRFE.........AIAFRAATG
  607-  659 (67.84/36.68)	PPDFRgACEVSEVYAKLLVP..ADYPRSSPAVLPRGEmregfpcavDVAFRHAVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.35|      20|      32|     247|     277|       5
---------------------------------------------------------------------------
  247-  272 (27.56/22.29)	EQ...QAKKCRQMqtIKGMiqrvLSFLQL
  279-  301 (32.79/18.89)	EQamgQLDKCQAM..IFGL....LDFFRM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29387 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AARNCREPPQVASPARTTAPPTGGMDTQHEHREAPAVETISTQPTQSSPARSTPLALEPNESDTANLAGEAEDDGQAEMQSEAGAPVADAATFTGGTCSQEEEHREHPVDEAVIPEMSQNVPPGGTCSQEEDQENTEDEPVISELTQNATPEGTCIQEEKQQEHPADEAVIMPELTQN
2) IQNIQQQTAAPNLQQQAHVGFQMQQANAAQANYSVRPPPMAPAVRPSVAPQTQRPASHISSGMCKQQPQPQPRLVGIMNQQHPRRVNLMQRVQQANNVAVMQTGHPGGQNKNNQQYESPPTSEIITRNNA
309
72
486
201










Molecular Recognition Features






MoRF SequenceStartStop




NANANA