<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29382

Description Uncharacterized protein
SequenceMVEGMAAERQLVVVVEGTAALGPYWHTIAAEYVEKIVRSFCAAQLSGQKLAGVPPELALVVFHTHGPYSAFVVQRSGWTKDMDTFLSWLSGISFSGGGFSEAAICEGLAEALMILQGSPSNNQNHQNHELQKHCVLVAASNPYPLPTPVYRPFVQSGDHKKNNEVTKESCLADAEAVAISFSQCCVSLSVVSPKQLPTLKAIYNAGKRNPQASDPSVDHVKNPHFLVLLSESFMEARTALSHPSPGNLVPNQIITKMDIAPAATVPGPTSNANPSVNGSMMGRQPTANIKVEPTIITPMVSAPAFSHMTPISNVTSQGVSALQSSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLSGATSMGPNMGATPIQVHMSNMISSGMTSTPSVISSMSGTVQPTGAQQLVQNTALGSFGSNNSTVSGNSNVAVSSSLANIQNNIATAQSVPPMAQGGLMSGSHGSQSGQGGIGTNQNMISSLGPTAISSAPAMMPTPGMTQQAGVNSLSVNNSSAMNMPMPQQPNGQQQSKYVKIWEGTLSGQRQGQPVFICKLEGYRSGTASDTLAADWPETMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSTQQPQMQQQQQLQQQHHPLHQQQLQQLQQQQLQQQHMQMQPQGQQLQQQQQIQQQMQQQQQQQQQMQQMQHQQQQQQQIQQQQQMQQQQQQMQQMQQQQPQQLQQQPQMVGPGMGQQQFMQGHGRAVQMMQGKIAPQGPGSMSGGGYLS
Length820
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-0.413
Instability index54.04
Isoelectric point8.34
Molecular weight88573.34
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29382
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     227.71|      39|      39|     692|     730|       1
---------------------------------------------------------------------------
  536-  571 (48.03/11.35)	...MPQQPNGQQQSKYVKIWEGTLSG.....QRQGQPVFICKLE
  661-  704 (57.17/14.88)	GDMVVFKPQVSTQQPQMQQQQQLQQQhhplhQQQLQQLQQQQLQ
  705-  744 (66.59/18.51)	QQHMQMQPQGQQLQQQQQIQQQMQQQ..qqqQQQMQQMQHQQ..
  745-  772 (55.92/14.40)	QQQ.......QQIQQ....QQQMQQQ.....QQQMQQMQQQQPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     293.65|      47|      48|     432|     478|       2
---------------------------------------------------------------------------
  232-  263 (30.66/ 9.61)	.SFME.ARTALSH...PS....PGNL........VPNQIITKM.D..IAP.AA..............
  264-  303 (38.29/14.14)	.........TVPGptsNANPSVNGSMM......GRQ...PTANiK..VEP.TII.TPM...VSA..P
  306-  353 (31.04/ 9.83)	SHMTPiSNVTSQG...VSALQ.SSSPSiisqetNVANEILQEH.KplVNP.IQQ.............
  356-  400 (34.02/11.60)	.........RPGG...PANVSILNNLS......QHRHSLSGAT.S..MGPnMGA.TPIqvhMSNmiS
  401-  430 (32.15/10.49)	SGMTS.TPS............VISSMS......GTVQPTGAQQ.L..VQN.TA..............
  432-  478 (78.01/37.69)	GSFGS.NNSTVSG...NSNVAVSSSLA......NIQNNIATAQ.S..VPP.MAQ.GGL...MSG..S
  486-  525 (49.49/20.78)	GGIGT.NQNMISS...LGPTAISSAPA......MMPT...........PG.MTQqAGV...NSL..S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.09|      11|      25|     782|     795|       3
---------------------------------------------------------------------------
  782-  795 (19.90/18.08)	GP.GMGQqqfMQGHG
  806-  817 (19.19/ 7.49)	APqGPGS...MSGGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     153.36|      45|     553|      22|      66|       4
---------------------------------------------------------------------------
   22-   66 (79.84/40.69)	GPYWHTIAAEYVE..KIVRSFCAAQLSGQKLAGVPPELALVVFHTHG
  576-  622 (73.51/37.00)	GTASDTLAADWPEtmQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.12|      29|      48|     134|     169|       5
---------------------------------------------------------------------------
  134-  162 (56.67/40.13)	CVLVAASNPYPLPT..PVY.....RPFVQ..SGDHKKN
  185-  222 (37.45/14.19)	CVSLSVVSPKQLPTlkAIYnagkrNPQASdpSVDHVKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29382 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IAPAATVPGPTSNANPSVNGSMMGRQPTANIKVEP
2) QNNIATAQSVPPMAQGGLMSGSHGSQSGQGGIGTNQNMISSLGPTAISSAPAMMPTPGMTQQAGVNSLSVNNSSAMNMPMPQQPNGQQQSKYVKIWE
3) QQQQPQQLQQQPQMVGPGMGQQQFMQGHGRAVQMMQGKIAPQGPGSMSGGGYLS
4) SHMTPISNVTSQGVSALQSSSPSIISQETNVANEILQEHKPLVNPIQQQVRPGGPANVSILNNLSQHRHSLSGATSMGPNMGATPIQVHMSNMISSGMTSTPSVISSMSGTVQPTGAQQLVQNTALGSFGSNNSTVSGNSNVAV
259
457
767
306
293
553
820
449










Molecular Recognition Features






MoRF SequenceStartStop




1) FMQGHGRAVQMMQGKI
790
805