<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29380

Description Uncharacterized protein
SequenceMDPDGKKFGTGPRELTGAVDLISQYKLQPHHDFFCKRPLPLAISDTHYLHNVVGDTEIRKGEGMELDQLIQNAYLRDKPAYIQPFDMETLGQAFQLRETAPVDLPSAEKGVPTISGKSKSESKDKEKKHKKHKDRDKDKEHKKHKHRHKDRSKDKDKDKDKKKDKSGHHEKKRKHEGMEDSVDLHKHKKSKHKSSKIDEMGNGLS
Length205
PositionHead
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.04
Grand average of hydropathy-1.477
Instability index34.27
Isoelectric point9.44
Molecular weight23623.46
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29380
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     110.62|      19|      19|     131|     149|       1
---------------------------------------------------------------------------
  119-  138 (27.81/ 8.80)	KSESKDK..EKKHkKHKDRDKD
  139-  158 (28.55/ 9.23)	KEHKKHK..HRHKdRSKDKDKD
  159-  179 (25.56/ 7.51)	KDKKKDKsgHHEK.KRKHEGME
  180-  198 (28.71/ 9.31)	DSVDLHK..HKKS.KHKSSKID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.96|      15|      19|      69|      87|       2
---------------------------------------------------------------------------
   69-   87 (22.96/26.42)	LIQNAYLRDKPayiqPFDM
   90-  104 (26.01/17.43)	LGQAFQLRETA....PVDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29380 with Med19 domain of Kingdom Viridiplantae
Unable to open file!