<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29379

Description Uncharacterized protein
SequenceMDGGHGHGGHGQRQPLSPAISASAVLPHQRQMQLHQHPARPAIADLFTLYLGMNSKQRAEDPARETANKLQKRVSALSRDLPPRDEQFIPDFEQLRMPFPDQEQLQAVTESVLISFVLQCSSHAPKSEFLLFATRCLCARGHLRWDSLLPSLLSAVSSVEAPMAQGGAVTVGGPVSSSSSAIVAPSAPSFHASNPTSPLSAMNTIGSPTQSGIDQPIGANASPIKRTEFSTPGQLGTAARGDQSRRGEEISYLHHLSCRIILAGLESSLKPATLAVIFQHMVNWLVNWDQRPHGVDEADTTQTWRIGRPVHEWMHLCLDVIWILVDEEKCRVPFYELVRSNLQFLENIPDDDALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFGTHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSHSQQSSTPGAVFSPDMIGEAVADRTIELLRFTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNVSPQSILLDFISSSQTLRIWSFNTSIREHLNNDQLQKGKQIDEWWKQMTKASGERMIDFMNLDERAMGMFWVLSFTMAQPACEAVMNWFTSAGTDVIQGPNMQPNERIAMMRETCPLSMSLLSGLSINLCLKLAFQLEDSIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRMFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGHAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLNHSFALHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQHGHLVQELLSKAIKNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERTELQQRIKAFCSSCSSEHWLKNQPPKRAELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAFYSNFLAFHPLRFTFVRDILAYFYGHLPSKLIVRVLSVLGASIKTPFSESFTQYLGPSTICPPQEYFANLLLSLVNNVIPPLSSKSKSHPADASGNAGRTSFSKPHASAQAGGISNTDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVSASQIVTSLVQLIAHVQAMLIQSNSGQGMSGGLGQNSGLPTSPSGGGAEAAGGNRANTSASGISANFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHMQLYSEAARIIKDCRWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNVVALLHSFFSNLPQEWLDSTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPHVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDLNSSIYAATHPKLVQHPS
Length1618
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.08
Grand average of hydropathy-0.071
Instability index44.77
Isoelectric point6.97
Molecular weight180910.20
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29379
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.81|      15|      15|    1208|    1222|       1
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 1208- 1222 (29.91/14.67)	ESFTQYLGP..STICPP
 1224- 1240 (20.90/ 8.31)	EYFANLLLSlvNNVIPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      15|     388|     400|       2
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  388-  400 (24.35/13.17)	RFLSQSYPSIAGE
  406-  418 (25.28/13.96)	RYSPITYPSVLGE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.76|      16|      22|     436|     451|       3
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  436-  451 (32.25/18.95)	WERAL...RCLR.HALR.TTP
  456-  476 (20.51/ 9.31)	WRRVLlvaPCYRsHSQQsSTP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.56|      20|      22|    1494|    1513|       6
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 1494- 1513 (34.78/18.75)	LRIAFRILGPLLPRLAFARP
 1519- 1538 (33.78/18.01)	LALLFNVLGDVFGKNSQASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.20|      52|     635|     919|     970|       7
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  919-  970 (93.75/68.56)	DFLMGRM..DKRGHAIQAWQQAETTVINQCN...QLLSPSAEP..NYVMTYLNHSF..ALH
 1384- 1407 (20.41/ 7.96)	...................QQLSVLMIQACG...LLLA.QLPP..EFHM............
 1550- 1610 (67.04/46.49)	DFLHHAVmyEGQGGPVQSTSKPKLEILTLCGkvmEILRPDVQHllSHLKTDLNSSIyaATH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.32|      23|     183|     842|     915|       8
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  893-  915 (42.71/83.27)	LLEQIMATSQHTWSEKTLRYFPP
 1082- 1104 (44.61/ 6.37)	LQQRIKAFCSSCSSEHWLKNQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.67|      27|     183|     322|     356|       9
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  322-  356 (36.93/42.38)	WILVDEekcrvPFYELVRSN.LQFLENIpddDALVS
  510-  537 (44.74/27.07)	WLLFAD.....IFFFLMKSGcIDFLDFV...DKLAS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.68|      20|      23|     570|     592|      12
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  572-  591 (32.75/24.02)	DPRKVETTRKIISFHKEDKS
  593-  612 (32.93/21.95)	DPNNVSPQSILLDFISSSQT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.44|      13|      15|    1031|    1043|      13
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 1031- 1043 (21.01/10.50)	QELLSKAIKNLAF
 1048- 1060 (21.43/10.84)	HELLPLDILLLAL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.83|      17|      23|    1440|    1456|      15
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 1440- 1456 (30.21/16.31)	ALLDPTWAS..Q...DNTSTAI
 1461- 1482 (18.62/ 7.26)	ALLHSFFSNlpQewlDSTHTVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.14|      14|      23|    1151|    1165|      16
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 1151- 1165 (19.25/19.36)	TDIADrVLAFYSNFL
 1173- 1186 (24.89/18.36)	TFVRD.ILAYFYGHL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.54|      24|      49|     153|     176|      18
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  153-  176 (39.94/27.65)	LSAVSSVEAPMAQGGAVTVGGPVS
  199-  222 (41.60/29.16)	LSAMNTIGSPTQSGIDQPIGANAS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29379 with Med23 domain of Kingdom Viridiplantae
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