<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29373

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPTPTPPPNPTPPSSANGAAASPPPKENQDGAAAGGGGAGGAGAGADAVAGAGTEAVDAAVGGGGGGGEAMEVDGGAGAGGGAGDVEVGAGGVAGRAQQASTPATVFRIRLKQTPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPPSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGISPYRWLPANSSSSSNLKTFEEKFLTQHPQSSAGWPNILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIITKSGALHVAGVPLVNPSTVVVWEVMPGLGNGIQTTAKINATSPLPPSLNPPSWAGFAPLASYLFSLQDYLVSEGAQTRKQIDNEITDAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLEPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQVVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTFKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGSGSSRSMVTSPTNSSPSPSNNQGTQGGVASSTGSSQMQEWVQGAIAKISNSADVSANAAPNPVSGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNPDSAMQKVQHFMNGKMEDTSSAASAVRSGLGAAKVEDGPATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGSSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPQLKIGACINPHLSNMEEDGDSNEGIQSLWPKKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGVPNPANERESWWISRWTHACPMCGGSWVKVV
Length1305
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy-0.186
Instability index51.01
Isoelectric point6.31
Molecular weight139110.58
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29373
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.69|      49|     155|     638|     687|       2
---------------------------------------------------------------------------
  638-  687 (84.15/51.51)	VDSYHVNvGSSIAPPAFSSSSCCLASVWHDTFK.DRTILKIIRVLPPAILN
  796-  845 (77.54/43.23)	IESALIN.PSTLLPEPWQASSDMLSNIEPDKMTvDPALLPSIQGYVDAVLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.17|      10|     155|     168|     177|       3
---------------------------------------------------------------------------
  168-  177 (22.93/10.63)	PSSNSSPPFW
  325-  334 (22.24/10.07)	PSQNSAQPRW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.01|      35|     155|     383|     417|       4
---------------------------------------------------------------------------
  383-  417 (61.87/34.44)	GL.GNGIQTTAKINATSPLPPSLNPPSWAGFAPLAS
  425-  460 (56.14/30.50)	YLvSEGAQTRKQIDNEITDAASIHCCPVSNFSAYVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.77|      43|      43|      32|      74|       5
---------------------------------------------------------------------------
   32-   74 (74.43/35.16)	GAAASPPPKENQ..DGAAAGGGGAGGA.GAGADAVAGAGTEAVDAA
   76-  118 (74.12/34.99)	GGGGGGGEAMEV..DGGAGAGGGAGDV.EVGAGGVAGRAQQASTPA
  889-  920 (27.21/ 8.00)	....SPSPSNNQgtQGGVASSTGSSQMqEWVQGAIA..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.18|      31|      62|    1113|    1144|       6
---------------------------------------------------------------------------
 1113- 1144 (51.65/39.86)	GTYTVLPEV.VEASLGPHMQNMPRPrGADAAGL
 1175- 1206 (53.53/36.16)	GPLDNMPQLkIGACINPHLSNMEED.GDSNEGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.24|      29|      62|     210|     238|       7
---------------------------------------------------------------------------
  210-  238 (59.08/35.54)	WSPPSCPRSLLVAN.........FHGR.ITIWTQPTKG.P
  264-  303 (40.15/21.49)	WLSGISPYRWLPANsssssnlktFEEKfLTQHPQSSAGwP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.98|      33|     115|     849|     881|       8
---------------------------------------------------------------------------
  849-  881 (55.78/26.61)	HFIT.RLRRYASFC...RTLASHAVGASSGSGSSRSM
  966- 1001 (52.14/24.45)	HFLH.RLCQLLLFCllfRRRQSPRLLANAQKNPDSAM
 1006- 1028 (22.07/ 6.58)	HFMNgKMEDTSSAA...SAVRS.GLGA..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.15|      16|     378|     178|     193|      12
---------------------------------------------------------------------------
  178-  193 (31.28/18.41)	IPIHILNPER.PTECSV
  570-  586 (25.87/13.89)	VPMPTTSDERsSSECSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.07|      15|      45|     473|     487|      13
---------------------------------------------------------------------------
  473-  487 (28.81/14.12)	WGSGVTSVAFDPTRG
  520-  534 (28.27/13.72)	WESSLEPVVLHPIFG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29373 with Med16 domain of Kingdom Viridiplantae
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