<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29372

Description Uncharacterized protein
SequenceMATPAVVSSDEDNSPTAEHPRPESAAPVAEASGPGAAAAAAAAAAVERTAAGDAPSAPAPPSTSSATLPPPPASPASHAAPGPPRPPFAGSAAYVTPPSSSSSAAFSYNILPRAPPPRQASPMPPAALQPPAPQQYFGNRPSFSYNVVSHANASLPTGQQFQLDTGTNRAVQVPMFAPPASLQPPAPGQLPRPSAPFPGAMTPNLPGSIRSPFPVPPRTSNILYGSNPQQGNLDASASKLDAPSASEASPHTMQSLPASGPEVFGAVGGFVPGQRSSNLSAPPSLLGRPVAPSASSLPQTSPSGAAPGAVPQTTQQQFYPSYPSAPGIVPPQPLWGYPPHPTSFLQSPFQSYPPGPLGPLGRPMVGTSAVTTSVTNIQPPGVTTIGGDPKELPPANPGSEQPLHTSAVPHPTGHGNQVNDQLEDKRSTGIQDSDAWSAHKTEAGVLYYYNALTGESTYQRPPGYMGELEKVAAQPVPASWDKIVGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGSLKGNSSLHDAGTVGNKGETGVEISTPAIQTGGRDSLPLRQAVASASPSALDLIKKKLQDAGASSLSSPLATPSSTASELNGSKPADGAPKGQQGSINGEKPKDNNGNGNMSDSSSDSDDEEHGPSKEDCIREFKEMLKERGVAPFSKWEKELPKLVFDPRFKAIPSHSTRRTIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEDIDPKTGYQEFKRKRGTDPRFEGLDRKEREALFKEKVRAIEEKVQSVRNALITDFKSMLRECKDIISTSHWTKVKEHIRSDPRYKAVKHEERENVFNEYIAELKSAEREVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDAVSSYQALLVEIIKDPKASWTESKPKLDKDPQGRALNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITQEIAARTTDEGKTAISSWSEAKGLLRSDPRYNKVSSKDRESIWRRYADDMARKLKQSDTEKLDTDGRQQRRSSDPPRRR
Length1041
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.793
Instability index56.18
Isoelectric point8.56
Molecular weight112388.76
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29372
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     513.34|      66|      66|     700|     765|       1
---------------------------------------------------------------------------
  566-  631 (34.34/13.71)	..............RQAVASASPSALDLIKKKLQDAgasslsSPLATPSSTASELNGSKP...ADgaPKgqqgsINGE.K....PKDN
  637-  697 (72.89/37.30)	MS.D....SSSDSDDEEHGPSKEDCIREFKEMLKE........RGVAPFSKWEKELPKLV...FD..PR.....FKAIpS....HSTR
  700-  765 (102.57/55.46)	IF.DHFVRTRADEERKEKRAAQKAAVEAYKQLLEEA......SEDIDPKTGYQEFKRKRG...TD..PR.....FEGL.D....RKER
  768-  828 (83.95/44.07)	LF.KEKVR..AIEEKVQ..SVRNALITDFKSMLRE.......CKDIISTSHWTKVKEHIR...SD..PR.....YKAV.K....HEER
  831-  873 (52.68/24.93)	VF.NEYIAELKSAEREVEQAA.KAKV....................DEQAKLRE..RERE...T....R..........K....RKER
  874-  934 (65.58/32.82)	E........EQEMERVKLKIRRKDAVSSYQALLVEI......IK..DPKASWTESKPKLD...KD..PQ.....GRAL.NpdlgQGDA
  937- 1001 (65.64/32.86)	LFrDH.VKDLYERCVRDFRALLS...EVITQEIAAR......TTD.EGKTAISSWSEAKGllrSD..PR.....YNKV.S....SKDR
 1004- 1037 (35.67/14.52)	IW...............RRYADDMA....RKLKQSD......TEKLD.TDGRQQ...RRS...SD..P....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     481.28|      47|      48|     243|     289|       2
---------------------------------------------------------------------------
    9-   61 (43.04/ 9.59)	.SDEDNS.PTAE........HPR.PESAAPVAEASG.............PGaaaaaaaaaavERTAAGDA..P.SAPA.PP
   71-  114 (51.88/12.98)	PPASPAS..HAA........PGP.PR..PP.FAGSAA.........YVtPP...........SSSSSAAFS.Y.NILP.RA
  115-  147 (39.11/ 8.08)	PPPRQAS.PMPP........AALqPPAPQQYFG....................................NR.P.SFSY.NV
  148-  193 (51.41/12.80)	VSHANASlPTGQ........QFQ.LDTGTNRAVQVPM.........FA.P..............PASLQPPaP.GQLP.RP
  198-  228 (37.62/ 7.51)	PGA........M.......tPNL.PGSIRSPFP..............V.PP............RTSNI.......LYGsNP
  243-  289 (86.35/26.19)	PSASEAS.PHTM........QSL.PASGPEVFGAVGG.........FV.PG...........QRSSNLSAP.P.SLLG.RP
  292-  338 (49.91/12.22)	PSA...S..............SL.PQTSPS..GAAPGavpqttqqqFY.PS...........YPSAPGIVP.PqPLWG.YP
  341-  363 (37.67/ 7.53)	PTSFLQS.P..F........QSY.P.PGP..LGP..........................................LG.RP
  367-  400 (43.43/ 9.74)	TSAVTTS.VTNI........Q...P...PGV.TTIGG..........................DPKEL..P.P.ANPG.SE
  455-  520 (40.87/ 8.76)	ESTYQRP.PGYMgelekvaaQPV.PASWDKIVGTDWS.........IV.TTsdgkkyyydnkQKVSSWQLP.P.EVAE.LN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.60|       8|      28|     406|     415|       3
---------------------------------------------------------------------------
  406-  415 (12.54/11.71)	SAvpHPTGHG
  437-  444 (15.06/ 6.01)	SA..HKTEAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29372 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFSYNILPRAPPPRQASPMPPAALQPPAPQQYFGNRPSF
2) AGASSLSSPLATPSSTASELNGSKPADGAPKGQQGSINGEKPKDNNGNGNMSDSSSDSDDEEHGPSKEDCIREFK
3) AKAKVDEQAKLRERERETRKRKEREEQEME
4) IVPPQPLWGYPPHPTSFLQSPFQSYPPGPLGPLGRPMVGTSAVTTSVTNIQPPGVTTIGGDPKELPPANPGSEQPLHTSAVPHPTGHGNQVNDQLEDKRSTGIQDSDAW
5) MATPAVVSSDEDNSPTAEHPRPESAAPVAEASGPGAAAAAAAAAAVERTAAGDAPSAPAPPSTSSATLPPPPASPASHAAPGPPRPPFAGSAAYVT
6) QLPPEVAELNKNADSGSLKGNSSLHDAGTVGNKGETGVEISTPAIQTGGRDSLPLRQAVASA
7) VVSHANASLPTGQQFQLDTGTNRAVQVPMFAPPASLQPPAPGQLPRPSAPFPGAMTPNLPGSIRSPFPVPPRTSNILYGSNPQQGNLDASASKLDAPSASEASPHTMQSLPASGPEVFGAVGGFVPGQRSSNLSAPPSLLGRPVAPSASSLPQTSPSGAAPGAVPQTTQQQFYPSYPSA
105
587
850
328
1
511
147
143
661
879
436
96
572
325










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYD
2) IWRRYA
3) LDLIKKKLQ
4) SAAPVAEASGPGAAAAAAAAAAVERTAAGD
496
1004
577
24
502
1009
585
53