<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29369

Description Uncharacterized protein
SequenceMDANWRPTQGSDPAAAAAGVDPNAPPPAGGDWRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATSQSDYLRKISLKMLSMETKTQQAPGNAQVIQNQNNPGAASGLPPQGSNQAQTSAIPLMSQQQSRQPNTSASVQTSSLTSIGQSLPGANQASLQQNVSVMPQNTMNNGLAQGNSQDIYVAQRQMAGRQQQQQQSQNQLIYQQQQQILMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQPMMAMQSTNQSGIQQNPLNSVQQSVQSLLQQPQQSVTRQQQQTQSSMHQQPSLQQAQQTQQPNISLQQQQQQVMGQQPNLQQNQLIGQQSGAVEMQQQQRLPVQSNNLLNMQQTQQMLNQQSMPLHQPQQLASQANMSNLQQQQQQNQQQQQLLGTVPNVSNVQRMHMLQTKAQQPQQQQHGQQSSMGLMQPQSQHSQLQQSQQHLISQFQSHPNQLQQQLGMQQQPSMQQRLQSSAGMLLQQSNIDQHKQFIQAQRALQEVSSSTSADSTAQTGDWQEEIYQMIKSLKDLHFAELSEMFSKISAKLHHVDTMIPAQKSSDHYEKMKGFKTLLERILQFLQISKSNIQPAFREKVPQYEKQILSILTSQRRKPLQPQGQQQFQQPAGQAPSSNISQQQQPSQSLQQHDSHTNPQASLSSMSTGLQSSGAAGIQHVPAPPATNFSVPTQQNGASVPQAGSVLENAQGSNFNSLQHGSMGGTLQQGSTGPMQGAMNAQLQASNSMLSHNSMSTMQPSANSMQANSSSLQQLKQQQDHQMMQNQQMKRHLFQQYQQKQMLQQQLPIPQQLQKQQQSQMQVPQLHAGNDVNELKPRQGTAMKPGMYQQHLGQRSYHQQLKQSGAFPISSPQNVQASSPQISHHSPLVDQHNPLSSQVKTGTPLHSANSPFVPSPSPSVAPSPIPVDSDKPLSNISSLTNTGHGQAGHQQTSLAPQSQSIAVNTPGISASPLLAEFTSADGSQGNMPAQVPTKSSAERPVDRLLKALRTTQRESLNAAVSDIRSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFMTNDGSGASKKMKRDTSAMPLNVSSGSVNDSFRETFSVDTPDLQSTATSRAKQQKAEVNHALMEEIHAINQQLIDTELNVCEDDAESFAATSEGAEGTVIKCTYAAVAVSPSLKSMFASAQMSPIMPLRLLVPAGYPKCSPVFLDKFPDEQRNSDDLSSQARSKFGILLRGLDEPMSLREIARTWDACARKVIVEYAQKTGGGTFSSTYGRWESCVGA
Length1296
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.03
Grand average of hydropathy-0.760
Instability index74.00
Isoelectric point9.28
Molecular weight142198.30
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29369
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     183.57|      25|      26|     308|     332|       1
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  250-  271 (32.36/ 6.08)	LLQ.PT..QMQSSQQ.........PMMAMQSTNQ
  308-  332 (49.18/14.64)	MHQQPSLQQAQQTQQ.........PNISLQQQQQ
  392-  412 (33.95/ 6.89)	LASQANMSNLQQQQQ.........QN....QQQQ
  451-  481 (34.16/ 6.99)	MQPQSQHSQLQQSQQhlisqfqshPN...QLQQQ
  647-  670 (33.93/ 6.88)	AGQAPS.SNISQQQQ.........PSQSLQQHDS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     748.81|      84|      84|     709|     792|       2
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  115-  206 (68.28/13.67)	.................N.....................QN..N...P.........................GAASG....LP.PQG..S.......NQA..QTSAIPLMSQQQS.......................RQ...................................PntsasvqtssltsigqsLPGAN.Q.ASLQQNVSV..MPQNTMNNGLAQGN...SQdiyvaQRQM
  207-  295 (63.51/12.12)	AGR.QQQQQ........Q....................sQN..QLIYQ.........................QQQQI....LMK.QK..L...Q..QNSL......MQPHIQQQQsllqptqmqssqqpmmamqstnqSG...................................I.................QQNPL.N.SVQQSVQSL..LQ.......QP.............Q..Q
  296-  383 (69.90/14.20)	SVT.RQ..Q........Q.....................QT..QSS..mhqqpslqqaqqtqqpnislqqqqqQ...V....M....G..Q...Q..PN.L..QQNQLIG..QQS.................................................................................GAV.E.MQQQQRLPV..QSNNLLN.MQQTQQ...ML.....NQQS
  384-  518 (57.96/10.30)	MPL.HQPQQ.........lasqanmsnlqqqqqqnqqqqQL..LGTVP.........................NVSNVqrmhMLQTKA..Q...Q..PQQQ..QHG......QQSS.......................MGlmqpqsqhsqlqqsqqhlisqfqshpnqlqqqlgmQ.................QQPSM.Q.QRLQSSAGM..LLQQ..SNIDQHKQ...FI.....QAQR
  519-  591 (48.92/ 7.35)	A.L.QEVSS........S.....................TS..ADSTA.........................QTGDW....QEEIYQmiK...S..LKDL..HFAEL................................S...................................E.................MFSKI.S.AKLHHVDTM..IPA......QKSSDhyeKM.....KGFK
  701-  784 (135.03/35.48)	ATN.FSVPT........Q.....................QN..GASVP.........................QAGSV....LENAQG..S...N..FNSL..QHGSMGGTLQQGS.......................TG...................................P.................MQGAM.N.AQLQASNSM..LSHNSMSTMQPSAN...SM.....QANS
  785-  869 (79.68/17.40)	SSL.QQLKQ........Q.....................QD..H.QMM.........................Q..........NQQM..K...RhlFQQY..QQKQM...LQQQL.......................PI...................................P...........qqlqkqQQSQM.QvPQLHAGNDVneLKPRQGTAMKPGMY...QQ.....HLGQ
  870-  946 (61.64/11.50)	RSYhQQLKQsgafpissP.....................QN.vQASSP.........................QI.S.................H..HSPLvdQHNPLSSQVKTGT............................................................P.................LHSA..N.SPFVPSPS.........PSVAPSPI...PV.....DSDK
  949- 1017 (51.44/ 8.17)	SNI.SSL.T........N.............tghgqaghQQ..TSLAP.........................QSQSI....AVNTPG..I...S..ASPL..LAEF...TSADGS...............................................................................QGNM.P.AQVPTKSS..............AER...PV.....D...
 1018- 1082 (45.06/ 6.09)	RLL.KALRT.......tQ.....................REslNAAVS.........................DIRSV....V.......S...M..IDRI..A.GSAPGNGSRAA.......................VG...................................E.................DLVAMtK.CRLQARNFM...........................TND
 1083- 1170 (67.41/13.39)	GSG.ASKKM........K.....................RD..TSAMP......................lnvSSGSV....NDSFRE..TfsvD..TPDL..QSTATSRAKQQ.........................KA...................................E.................VNHAL.M.EEIHAINQQ..LIDTELNVCEDDAE...SF.....AATS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.13|      36|     576|      33|      69|       3
---------------------------------------------------------------------------
   33-   69 (55.08/33.83)	RAQLQPEARSRIV...NKIMETL..KKHLPVSvPEGLNELQK
  605-  645 (52.05/27.69)	KSNIQPAFREKVPqyeKQILSILtsQRRKPLQ.PQGQQQFQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.45|      16|     503|     677|     700|       4
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  677-  700 (21.68/21.73)	SLSSMSTGLQSSgaagiqhvPAPP
 1190- 1205 (28.77/11.88)	SLKSMFASAQMS........PIMP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29369 with Med15 domain of Kingdom Viridiplantae
Unable to open file!