<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29363

Description Uncharacterized protein
SequenceMSDGLDRWRDFFRGAGVGICEVIEKAILVAAADQPEEFLRRRDRIAERLFNAVLATRPSSHGCTGSTLSVLPATPAVVEDKGSVRRVPEKESKVDSSSLGAPGRGLPLPNHEVEDSDSDSEDDERLRRAAACNYGHNYDDDNEEEEEEQAAATQEEDGHPEDDHAAADELEALTNEMDEESQIVREVLRIKELLLHKQDHSDSTLFESLRRLQLMQLSVSTLQATEIGRAVNGLRKHNSQQIRHLVQTLIQDWKILVDEWVMTTVALTDNSPLTSNPSVVDDEDEEQGLPSPPLDEGAFFAPETTAIQLSEFFDEMDEDGNLRHNNDARPGNKRENNGRRPANISAVAKPELTRPVGTAERVQVRKPELTRQSPSMRQANQQKSQSSSLQAKPHGMLNKQSRPPGSESGSVRPIRAAPQQKPVGEMKYKQTQDHFAVERKPAMGRVDKSRPPVQSSAGVRLESAKPKTYDGLESNGRLEVAKRKLQERYQEAENAKKQRTIQVMELGDIPKPKNHNRQPIMKSRNNIRSRANGRR
Length535
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.03
Grand average of hydropathy-0.943
Instability index70.00
Isoelectric point5.64
Molecular weight59866.76
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29363
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.85|      15|      18|      82|      98|       1
---------------------------------------------------------------------------
   82-   98 (21.56/17.42)	GsvRRVPEKESKV.DSSS
  103-  118 (24.29/13.12)	G..RGLPLPNHEVeDSDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.13|      40|     136|     143|     183|       2
---------------------------------------------------------------------------
  121-  141 (24.93/ 6.94)	EDDERLRRAAACNY..GHNYDDD..................
  143-  182 (66.99/35.73)	EEEEEEQAAATQEED.GHPEDDHAAADELEALTNEMDEESQ
  281-  321 (63.21/33.14)	DDEDEEQGLPSPPLDeGAFFAPETTAIQLSEFFDEMDEDGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.58|      38|      45|     334|     374|       3
---------------------------------------------------------------------------
  334-  370 (59.39/32.51)	...RENNGRRPANISAVAKP.....ELTRPVGTAERVQV.......RKPELT
  374-  412 (39.13/23.31)	PsmRQANQQKSQSSSLQAKPhgmlnKQSRPPGS.ESGSV.......R.....
  413-  444 (34.06/12.44)	P.iR.............AAP.....Q.QKPVGEMKYKQTqdhfaveRKPAMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.27|      11|      16|     456|     467|       4
---------------------------------------------------------------------------
  456-  467 (16.06/15.24)	SAGvRLESAKPK
  474-  484 (20.20/13.43)	SNG.RLEVAKRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29363 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HGCTGSTLSVLPATPAVVEDKGSVRRVPEKESKVDSSSLGAPGRGLPLPNHEVEDSDSDSEDDERLRRAAACNYGHNYDDDNEEEEEEQAAATQEEDGHPEDDHAAADELEALTNEMD
2) SEFFDEMDEDGNLRHNNDARPGNKRENNGRRPANISAVAKPELTRPVGTAERVQVRKPELTRQSPSMRQANQQKSQSSSLQAKPHGMLNKQSRPPGSESGSVRPIRAAPQQKPVGEMKYKQTQDHFAVERKPAMGRVDKSRPPVQSSAGVRLESAKPKTYDGLESNGRLEVAKRKLQERYQEAENAKKQRTIQVMELGDIPKPKNHNRQPIMKSRNNIRSRANGRR
3) SPLTSNPSVVDDEDEEQGLPSPPLDEGAFFA
61
310
271
178
535
301










Molecular Recognition Features






MoRF SequenceStartStop




1) AIQLSEFF
2) KRKLQE
3) MKYKQTQDHF
4) VRPIRAAP
306
482
426
411
313
487
435
418