<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29359

Description ATP-dependent DNA helicase
SequenceMEDEENIEEELLLVESELHGLQDKIKMLLDRQEELYERQSQLQALLEISKTSRDAASSAPSVAPEDWSGKFSWDSQADDIRFNVFGISSYRSNQREIINSIMSGKDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTNKEVEKLIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVPMIALTATATSKVQMDLIEMLHIPRCVKFVSTVNRPNLYYKVYEKSSVGKVVIDEIANFITESYPNKESGIVYCFSRKECEQVAKELRERGIAADYYHADMDSVAREKVHMRWSKSKSQVIVGTVAFGMGINKPDVRFVVHHSLSKSMETYYQESGRAGRDGLPSECVLYYRPGDVPRQSSMVFYENCGLQNLYDIVRYCQSKKSCRRGAFFQHFGEAVQECNGMCDNCASSIELKDIDATYHTKIIVSLLQDMQHNDQRATLLQLVDKFKTKWKHSGCSNEAVDLKKEEIEQLIVQLIIDRVLKEEFQHTAYTTNAYVALGPLWKLALQGNRPVKLTGAIHSQDTGGASKSTKRSQMSNLEAKLDDLRRTISSDNGGIFPHAVLSTQQISLLSSHKPTTIAELENLIGKVKADKYGSDIIEVMQSEIDGGKDSGENGAKRQKKDKDVVLVESSEEEA
Length704
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy-0.359
Instability index45.98
Isoelectric point6.19
Molecular weight78965.27
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29359
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.40|      20|      28|     651|     673|       1
---------------------------------------------------------------------------
  651-  673 (28.32/32.18)	ENLIGKVKADKygsDIIEVMQSE
  682-  701 (33.07/25.19)	ENGAKRQKKDK...DVVLVESSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.30|      23|      28|     424|     448|       3
---------------------------------------------------------------------------
  424-  448 (38.45/29.68)	RQSSmvFYENCG..LQNLYDIVRYCQS
  453-  477 (40.85/24.93)	RRGA..FFQHFGeaVQECNGMCDNCAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.96|      24|     111|     147|     177|       4
---------------------------------------------------------------------------
  152-  177 (37.29/36.85)	LGIPAYM.LTSTTNKevEKLIYKALEK
  267-  291 (41.67/21.81)	LHIPRCVkFVSTVNR..PNLYYKVYEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.27|      13|      31|     589|     601|       5
---------------------------------------------------------------------------
  589-  601 (23.46/14.02)	SQDTGG....ASKSTKR
  619-  635 (17.82/ 9.04)	SSDNGGifphAVLSTQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.98|      24|      31|     499|     522|       8
---------------------------------------------------------------------------
  499-  522 (42.44/34.22)	DMQHNDQRATLLQL.VDK.FKTKWKH
  531-  556 (29.54/21.47)	DLKKEEIEQLIVQLiIDRvLKEEFQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.10|      16|      16|      15|      30|       9
---------------------------------------------------------------------------
   15-   30 (26.42/18.40)	ESELHGLQDKIKMLLD
   32-   47 (25.68/17.67)	QEELYERQSQLQALLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29359 with Med34 domain of Kingdom Viridiplantae
Unable to open file!