<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29357

Description Uncharacterized protein
SequenceMASKGGSNNKGEGPAIGIDLGTTYSCVGVWQHDRVEIVANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQADMKLWPFKVVPGAGDKPMIVVTYKGEEKKFSAEEISSMVLTKMREIAEAFLSTTINNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSTGEKNVLIFDLGGGTFDVSILTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFRRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDAKMDKTQIHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNQKVQDLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVTFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEQVRQKVEARNALENYAYNMRNTVKDDKIASKLPAEDKKKIEDSIEDAIRWLDGNQLAEAEEFEDKMKELENICNPLISKMYQGGPAGMDEDVPSGGAGAGTGGGSGGAGPKIEEVD
Length658
PositionUnknown
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.459
Instability index37.35
Isoelectric point5.18
Molecular weight72053.58
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29357
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.91|      23|      26|      39|      61|       1
---------------------------------------------------------------------------
   19-   37 (27.93/20.00)	..DLG..TTYSCVGVWQHDRVEI
   39-   61 (40.68/33.05)	ANDQGNRTTPSYVAFTDTERLIG
   63-   84 (34.30/26.52)	AAKNQVAMNPTNTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.71|      25|      26|     560|     584|       3
---------------------------------------------------------------------------
  540-  556 (18.94/ 8.38)	......EDEQVRQKV..EAR.NALEN
  560-  584 (38.26/24.11)	NMRNTVKDDKIASKLPAEDK.KKIED
  588-  613 (35.52/21.88)	DAIRWLDGNQLAEAEEFEDKmKELEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.76|      24|     189|     176|     206|       4
---------------------------------------------------------------------------
  149-  172 (40.01/30.02)	INNAVVTVPAYFNDSQRQATKDAG
  183-  206 (38.75/17.77)	INEPTAAAIAYGLDKKATSTGEKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.13|      14|      41|     347|     362|       5
---------------------------------------------------------------------------
  347-  362 (18.85/17.74)	VLVGGSTRipKVQQLL
  391-  404 (24.28/14.55)	ILSGEGNQ..KVQDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.42|      23|      26|     420|     443|       7
---------------------------------------------------------------------------
  420-  443 (34.70/24.87)	GVMTTLIPRNTTiPTKKEQVFSTY
  449-  471 (37.72/22.54)	GVLIQVYEGERT.RTKDNNLLGKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29357 with Med37 domain of Kingdom Viridiplantae
Unable to open file!