<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29355

Description Uncharacterized protein
SequenceMEIEEDDAGGGGEAAGVSTVAIAVSGSKSSRHALKWALDKFVPGGRVLFRILHVRPPITMVPTPMGNFIPISQVREDVASAYCEELEWRARNMLLPFKKMCAQRQVEAEAVLIESNDVPSAISEEIDKFNICKLVLGSSSKGIFRRKLKGSKTASRICECIPSFCTAYVVAKGKLSFVHSATSDASETPRSISSLTVSSPSTRSVSSTTPSEWVDTNGTASFDRPSLSSQRDQAVANINRLSNRGANPSGRAGSEISYHDDTDLMRNSHSIESEAHFSSRSSSSSSWNSVYKSFRRDSFPDSSDLHAVVSENAPNLKHSGDQDGLKLEIERMKLKLQHLQKLHENAHNESVDSTQKVDNNLGIRRFEDEVKLKEIDLTEEMVRRLVTRMERHEQGVDRTEVEPKQGSSEREATDSSNGDAGEKRIGETIVGRCFTKYNRYSWEQIQASTSSFSSDLMIGKGSYGTVYKAKFQHTVAAVKVLNSHDGCGTQQLQQELEVLGKIRHPHLLLMLGACPEHGCLVYEYMENGSLDDVLLHRRRRDSSSAPPLAWFDRFRIAWEVAAAVLFLHSAQPDPIIHRDLKPGNILLDRNLAAKVGDAGLSTALQLPSAADVAGGGGTMVKHTAPVGTFCYIDPEYQRTGAVSAKSDVYALGVVLLQLLTGRPPMGLAHAVETALDLDLEATGGGSSSAFAEMLDAAAGEWPLEEARELAALALRCAEMRRRDRPGLREHVLPALERMKDLAAKAAAAAAREKNTALVLGSSTPTPSHFLCPILQEVMADPCVASDGYTYDRKAIEVWLGMNTKSPMTNLKLQSRSLIPNHSLRSAIMDWRTSRSR
Length836
PositionTail
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.06
Grand average of hydropathy-0.367
Instability index48.25
Isoelectric point6.60
Molecular weight91499.34
Publications
PubMed=20148030

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29355
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.10|      20|      30|     703|     723|       1
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  703-  723 (29.46/20.31)	LEEARELAALAlRCAEMRRRD
  735-  754 (31.64/17.47)	LERMKDLAAKA.AAAAAREKN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.12|      42|      45|     162|     206|       2
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  162-  197 (42.24/32.01)	............PSfctAYVVAKGKLSFV..............H.SATSDASETPRSISSLTV
  198-  243 (60.17/35.96)	SSPSTRSVSsttPS...EWVDTNGTASFD..............RpSLSSQRDQAVANINRLSN
  246-  284 (27.70/12.55)	ANPSGRAGS....................eisyhddtdlmrnsH.SIESEAHFSSRSSSS...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.14|      19|      30|     468|     487|       3
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  468-  487 (28.22/25.69)	KAKFQHTVAAVKVLNSHdGC
  501-  519 (36.92/27.92)	KIRHPHLLLMLGACPEH.GC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.88|      11|      37|      77|      87|       4
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   77-   87 (20.30/11.94)	DVASAYCEELE
  117-  127 (19.58/11.27)	DVPSAISEEID
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.89|      44|     604|       6|      65|       5
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    6-   60 (65.81/59.23)	DDAGGGG....EAAGVSTVAI.........AVSgSKSSRHALkwaldkfvpgGRVLFRILHVRPPITM
  611-  667 (68.08/35.95)	DVAGGGGtmvkHTAPVGTFCYidpeyqrtgAVS.AKSDVYAL..........GVVLLQLLTGRPPMGL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.29|      31|      35|     534|     565|       6
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  534-  565 (50.76/27.59)	LLHRRRRD....SSSAPPLAWFDRfRIAWEVAAAVL
  566-  600 (47.52/21.83)	FLHSAQPDpiihRDLKPGNILLDR.NLAAKVGDAGL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.32|      42|      45|     347|     391|       7
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  347-  391 (62.21/60.76)	HNESVDSTQkVDNNLGI..RRFED....EVKLKEIDltEEMVRRLVTRMER
  392-  439 (64.10/49.80)	HEQGVDRTE.VEPKQGSseREATDssngDAGEKRIG..ETIVGRCFTKYNR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.76|      12|     701|      62|      73|       8
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   62-   73 (25.09/19.00)	PTPMGNFIPISQ
  764-  775 (25.67/19.62)	PTPSHFLCPILQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29355 with Med32 domain of Kingdom Viridiplantae
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