<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP29353

Description Uncharacterized protein
SequenceMAATPLPPAAQLPPPPPGDSAAALPPPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDITCNNESLRSRQIHPLDMSQLTKMTGMEYVLSDVQEPHLFVIRKQKRLSSEKSDPMLPMLAYYILDGSIYQAPQLCNVFASRISRAMHHISKAFTTACSKLEKIGNVETESDAAASESKTQKEAIDLKELKRVDHILMSLQRKLPPAPPPPPFPEGYVPPSASDQEKAPDDLSSEALPPSIDPIIDQGPAKRPRFQ
Length260
PositionHead
OrganismBrachypodium distachyon (Purple false brome) (Trachynia distachya)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Brachypodieae> Brachypodium.
Aromaticity0.07
Grand average of hydropathy-0.412
Instability index73.15
Isoelectric point5.57
Molecular weight28806.71
Publications
PubMed=20148030

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coactivator activity	GO:0003713	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP29353
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.08|      11|      33|      93|     103|       2
---------------------------------------------------------------------------
   93-  103 (21.01/12.57)	YVL..SDVQEPHL
  127-  139 (16.07/ 8.17)	YILdgSIYQAPQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.98|      12|      17|     214|     225|       4
---------------------------------------------------------------------------
  214-  225 (26.06/12.61)	PPPFPEGYVPPS
  233-  244 (21.92/ 9.43)	PDDLSSEALPPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP29353 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSLQRKLPPAPPPPPFPEGYVPPSASDQEKAPDDLSSEALPPSIDPIIDQGPAKRPRFQ
202
260










Molecular Recognition Features






MoRF SequenceStartStop




1) ILMSLQRKL
2) SIDPIIDQGPAKRPRFQ
200
244
208
260